View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11732_low_24 (Length: 320)
Name: NF11732_low_24
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_24 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 38850905 - 38850586
Alignment:
| Q |
1 |
ttgattaatacttacaatttcaaggatcagtttgtgaactcactattcaaagaaactatctttgtgatttgtttttcaaatgtactatgaataaggatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850905 |
ttgattaatacttacaatttcaaggatcagtttgtgaactcactattcaaagaaactatctttgtgatttgtttttcaaatgtactatgaataaggatca |
38850806 |
T |
|
| Q |
101 |
tagaaactaattggattttatggtgcagggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttaccct |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38850805 |
tggaaactaattggattttatggtgcagggagcattgtctactgctgcagtattttgtttacaatcatgggcaatgactatcaagggacctacttaccct |
38850706 |
T |
|
| Q |
201 |
tcaatgttcaatccacttgcacttgtttttgttgcctttgcagaagctatgatacttggtgaacccctaacggttggaacgtatgaatccttttccttct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
38850705 |
tcaatgttcaatccacttgcacttgtttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttct |
38850606 |
T |
|
| Q |
301 |
tacccttaattatatcaatt |
320 |
Q |
| |
|
|||| ||||||||| ||||| |
|
|
| T |
38850605 |
taccgttaattataacaatt |
38850586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 127 - 288
Target Start/End: Original strand, 29148025 - 29148186
Alignment:
| Q |
127 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
226 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||||||| || || || ||||||||||||||| | ||||| ||||| | || ||| | |
|
|
| T |
29148025 |
agggagcattggctactgctgctacattttgtttactatcatgggcaattaccattaaaggacctacttaccctccgatgtttaatccgttggctcttat |
29148124 |
T |
|
| Q |
227 |
ttttgttgcctttgcagaagctatgatacttggtgaacccctaacggttggaacgtatgaat |
288 |
Q |
| |
|
||| |||||| | |||| ||||| |||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
29148125 |
tttcgttgccatatcagaggctatcatacttggcgaaccgttaagggttggaacgtatgaat |
29148186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 301
Target Start/End: Complemental strand, 29222849 - 29222675
Alignment:
| Q |
127 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
226 |
Q |
| |
|
||||||||||| |||| ||||| ||||||||||| | |||||||||| | || ||||||||||||| |||| |||||||||||||| | || ||||| |
|
|
| T |
29222849 |
agggagcattggctacagctgctacattttgtttactaacatgggcaattaaaattaagggacctactttccctccaatgttcaatccattggctcttgt |
29222750 |
T |
|
| Q |
227 |
ttttgttgcctttgcagaagctatgatacttggtgaacccctaacggttggaacgtatgaatccttttccttctt |
301 |
Q |
| |
|
||| |||||| | | || |||| |||||||||||||| || | |||||||||||||||| |||||| |||| |
|
|
| T |
29222749 |
tttcgttgccatatctgacactatcatacttggtgaaccactcaaagttggaacgtatgaatatttttccctctt |
29222675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 127 - 299
Target Start/End: Complemental strand, 5302869 - 5302697
Alignment:
| Q |
127 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
226 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| ||||||||| || || ||||||||||||| ||| ||| ||||||||||||||||| || || |
|
|
| T |
5302869 |
agggagcattggctactgctgcaacattttgtttactatcatgggcgatcacaatcaagggacctagttatcctccaatgttcaatccactttgtctagt |
5302770 |
T |
|
| Q |
227 |
ttttgttgcctttgcagaagctatgatacttggtgaacccctaacggttggaacgtatgaatccttttccttc |
299 |
Q |
| |
|
|||||||||| || |||||||| | |||||||||||||| || | ||||||||||| |||| |||||||||| |
|
|
| T |
5302769 |
ttttgttgccatttcagaagctttcatacttggtgaaccactcaaagttggaacgtaagaatacttttccttc |
5302697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University