View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11732_low_32 (Length: 242)

Name: NF11732_low_32
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11732_low_32
NF11732_low_32
[»] chr7 (14 HSPs)
chr7 (34-195)||(21649686-21649839)
chr7 (164-242)||(28115481-28115559)
chr7 (177-241)||(30355189-30355253)
chr7 (179-242)||(21188375-21188438)
chr7 (181-242)||(42682057-42682118)
chr7 (177-242)||(46863293-46863358)
chr7 (172-242)||(41047831-41047901)
chr7 (177-242)||(40587720-40587785)
chr7 (177-240)||(28980123-28980186)
chr7 (112-191)||(33603135-33603214)
chr7 (177-239)||(43686859-43686921)
chr7 (178-242)||(17838710-17838775)
chr7 (177-242)||(36394887-36394952)
chr7 (110-142)||(20353302-20353334)
[»] chr4 (14 HSPs)
chr4 (108-240)||(243296-243428)
chr4 (179-242)||(39588127-39588190)
chr4 (177-242)||(56138311-56138376)
chr4 (179-242)||(34530744-34530807)
chr4 (177-242)||(44561279-44561344)
chr4 (179-242)||(42885510-42885575)
chr4 (177-242)||(958543-958608)
chr4 (179-242)||(34154377-34154440)
chr4 (179-242)||(51429278-51429341)
chr4 (179-242)||(56304911-56304974)
chr4 (177-239)||(1041994-1042056)
chr4 (179-241)||(6283417-6283479)
chr4 (109-142)||(51429411-51429444)
chr4 (115-191)||(28322176-28322252)
[»] chr2 (9 HSPs)
chr2 (177-241)||(41500184-41500248)
chr2 (177-242)||(2920465-2920530)
chr2 (177-242)||(24512226-24512291)
chr2 (107-193)||(16327345-16327431)
chr2 (177-242)||(43491168-43491233)
chr2 (177-242)||(2648176-2648241)
chr2 (177-237)||(10365746-10365806)
chr2 (112-142)||(40055312-40055342)
chr2 (180-242)||(40679546-40679608)
[»] chr1 (10 HSPs)
chr1 (177-242)||(29763168-29763233)
chr1 (177-242)||(42572706-42572771)
chr1 (179-242)||(14174860-14174923)
chr1 (179-242)||(27487615-27487678)
chr1 (179-241)||(49927451-49927513)
chr1 (179-242)||(13147557-13147620)
chr1 (195-242)||(26637205-26637252)
chr1 (172-242)||(6434802-6434872)
chr1 (178-242)||(29709260-29709324)
chr1 (177-229)||(49395662-49395714)
[»] chr3 (20 HSPs)
chr3 (177-241)||(55207613-55207677)
chr3 (179-242)||(34694383-34694446)
chr3 (172-242)||(41577129-41577199)
chr3 (177-242)||(51696523-51696588)
chr3 (177-241)||(41803057-41803121)
chr3 (177-241)||(51402348-51402412)
chr3 (179-242)||(19454300-19454363)
chr3 (177-242)||(13896825-13896890)
chr3 (179-232)||(24703374-24703427)
chr3 (177-242)||(43476251-43476316)
chr3 (177-242)||(45101797-45101862)
chr3 (177-242)||(49609442-49609507)
chr3 (177-242)||(55385196-55385261)
chr3 (195-242)||(2426561-2426608)
chr3 (181-242)||(7245155-7245216)
chr3 (177-242)||(43568925-43568990)
chr3 (177-242)||(52570515-52570580)
chr3 (110-142)||(18442202-18442234)
chr3 (110-142)||(19487276-19487308)
chr3 (195-239)||(41137785-41137829)
[»] chr8 (6 HSPs)
chr8 (179-242)||(3395927-3395990)
chr8 (177-242)||(41274651-41274716)
chr8 (179-242)||(18441390-18441453)
chr8 (177-239)||(26451539-26451601)
chr8 (179-241)||(41858073-41858135)
chr8 (177-241)||(42602519-42602583)
[»] chr6 (9 HSPs)
chr6 (177-242)||(12783906-12783971)
chr6 (177-242)||(13401545-13401610)
chr6 (179-242)||(29061331-29061394)
chr6 (179-242)||(32034341-32034404)
chr6 (181-242)||(29065791-29065852)
chr6 (181-242)||(29074804-29074865)
chr6 (181-242)||(29079568-29079629)
chr6 (181-242)||(29107377-29107438)
chr6 (112-188)||(30258377-30258453)
[»] chr5 (7 HSPs)
chr5 (177-242)||(542739-542804)
chr5 (177-242)||(18307313-18307378)
chr5 (177-238)||(35564320-35564381)
chr5 (100-191)||(18155501-18155591)
chr5 (179-241)||(42865754-42865816)
chr5 (177-242)||(25497570-25497635)
chr5 (110-142)||(6628372-6628404)
[»] scaffold0192 (2 HSPs)
scaffold0192 (177-242)||(18848-18913)
scaffold0192 (110-142)||(19007-19039)
[»] scaffold0199 (1 HSPs)
scaffold0199 (177-242)||(12336-12402)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 195
Target Start/End: Original strand, 21649686 - 21649839
Alignment:
Q  34 tgaaatatactattgctttcaatttgcggttacgtgtttactttacttactactctacgaatagtttcaattgattatgaaaattgttgttgacacatat 133  Q
    ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||      ||||||||    
T  21649686 tgaaatatactattgctttcaatttgcggttacgtgtttact----ttactactctacgaatagtttcaattgattatgaaaattg----caacacatat 21649777  T
Q  134 gcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgccgatggt 195  Q
    |||||||||||| || |  ||||||||||| ||||||||||   |||||||||| |||||||    
T  21649778 gcaaaggcttagaaatacgagtaaattatataaatatcctttactagttaactgtcgatggt 21649839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 28115559 - 28115481
Alignment:
Q  164 caaatatccttccgtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||| |||||||||||  || |||||||||||| |||| | ||||||||||||||||||||||||||||||    
T  28115559 caaatatccttcggtagttaactgttgagggtcttctgctacaaatctagcataagctctctcatccattattcatctc 28115481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 30355253 - 30355189
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||||| | |||||||||| |||| | ||| |||||||||||||||||||||||||    
T  30355253 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 30355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 21188438 - 21188375
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  21188438 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 21188375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 42682057 - 42682118
Alignment:
Q  181 ttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||| | |||||||||| |||| | ||||||| ||||||||||||||||||||||    
T  42682057 ttaactgccgaggatcttctgctacaaatctagcataagttctctcatccattattcatctc 42682118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 46863358 - 46863293
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||| ||||||||||||||||||    
T  46863358 gtagttaactgccgaagatcttctgctacaaatctggcagaagctctttcatccattattcatctc 46863293  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 41047831 - 41047901
Alignment:
Q  172 cttccgtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||| ||||||||||||||| | |||||||||| |||| | |   ||||||||||||||||||||||||||    
T  41047831 cttcggtagttaactgccgaggatcttctgctacaaatctggaggaagctctctcatccattattcatctc 41047901  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 40587720 - 40587785
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||| |||||||||| |   | ||||||||||||||||||||||||||    
T  40587720 gtagttaactgccgaggatcttatgctataaatctgaaagaagctctctcatccattattcatctc 40587785  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 240
Target Start/End: Complemental strand, 28980186 - 28980123
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatc 240  Q
    ||||||||||||||| | | |||||||| |||| |  || ||||||||||||||||||||||||    
T  28980186 gtagttaactgccgaggattttctgctacaaatctgacagaagctctctcatccattattcatc 28980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 191
Target Start/End: Original strand, 33603135 - 33603214
Alignment:
Q  112 gaaaattgttgttgacacatatgcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgccga 191  Q
    |||| |||||||||||||||||||||||||| || |||| |||||||  | | || ||||| ||  ||||||||||||||    
T  33603135 gaaatttgttgttgacacatatgcaaaggctgagaaacacaagtaaaagacaaaactatccctcgatagttaactgccga 33603214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Complemental strand, 43686921 - 43686859
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcat 239  Q
    |||||||||||||||   | |||||||| |||| |  ||||||||||||||||||||||||||    
T  43686921 gtagttaactgccgagaattttctgctacaaatctgacataagctctctcatccattattcat 43686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 17838710 - 17838775
Alignment:
Q  178 tagttaactgccgatggtcttctgctataaatattgcataagctc-tctcatccattattcatctc 242  Q
    |||||||||||||| | |||||||||| |||| | ||| || ||| ||||||||||||||||||||    
T  17838710 tagttaactgccgacgatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 17838775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 36394952 - 36394887
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||| |||| | |||||||||| |||| | ||| |||||||||||||| ||||| |||||    
T  36394952 gtagttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccgttattaatctc 36394887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 20353302 - 20353334
Alignment:
Q  110 atgaaaattgttgttgacacatatgcaaaggct 142  Q
    |||||||||| ||||||||||||||||||||||    
T  20353302 atgaaaattgatgttgacacatatgcaaaggct 20353334  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 243428 - 243296
Alignment:
Q  108 ttatgaaaattgttgttgacacatatgcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgccgatggtcttctgctataa 207  Q
    ||||||||||||||||||||||||||||||||||  || ||||  ||||| ||||  |||||||  || | ||||||||| ||| | ||||||| || ||    
T  243428 ttatgaaaattgttgttgacacatatgcaaaggccgagaaacacgagtaatttatctaaatatctctcagcagttaactgtcgaggatcttctgttacaa 243329  T
Q  208 atattgcataagctctctcatccattattcatc 240  Q
    || | ||| |||||||||||  |||||||||||    
T  243328 atctggcagaagctctctcactcattattcatc 243296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 39588127 - 39588190
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||||| ||| ||||||||||||||||||||||||||    
T  39588127 agttaactgccgaggatcttctgctacaaatatggcagaagctctctcatccattattcatctc 39588190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 56138311 - 56138376
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  56138311 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 56138376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 34530807 - 34530744
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  34530807 agttaactgccgaggatcttctgctacaaatttggcagaagctctctcatccattattcatctc 34530744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 44561344 - 44561279
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | || ||||||| |||| | ||| ||||||||||||||||||||||||||    
T  44561344 gtagttaactgccgaggatcgtctgctacaaatctggcagaagctctctcatccattattcatctc 44561279  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 42885510 - 42885575
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatatt--gcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| |||||||||| ||| ||   ||| ||||||||||||||||||||||||||    
T  42885510 agttaactgccgatgatcttctgctacaaaaatctggcagaagctctctcatccattattcatctc 42885575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 958608 - 958543
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| ||||   ||| ||||||||||||||||||||| ||||    
T  958608 gtagttaactgccgaggatcttctgctacaaatccggcagaagctctctcatccattattcttctc 958543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 34154440 - 34154377
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||| || | |||||||||| |||| | ||| ||||||||||||| ||||||||||||    
T  34154440 agttaactgcagaggatcttctgctacaaatctggcagaagctctctcatctattattcatctc 34154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 51429341 - 51429278
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||| ||| | |||||||||| |||| | | | ||||||||||||||||||||||||||    
T  51429341 agttaactgtcgaggatcttctgctacaaatctggaagaagctctctcatccattattcatctc 51429278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 56304911 - 56304974
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||| |||||| | | |||||||| |||| | ||| ||||||||||||||||||||||||||    
T  56304911 agttaattgccgaggattttctgctacaaatctggcagaagctctctcatccattattcatctc 56304974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 1041994 - 1042056
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcat 239  Q
    ||||||||||||||| | |||||| ||| |||| | |||||||||||||||| |||| |||||    
T  1041994 gtagttaactgccgaggatcttctactacaaatctggcataagctctctcattcattgttcat 1042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 6283479 - 6283417
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||| | |||||||||  |||| | ||  |||||||||||||||||||||||||    
T  6283479 agttaactgccgaggatcttctgcttcaaatctggccgaagctctctcatccattattcatct 6283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 51429444 - 51429411
Alignment:
Q  109 tatgaaaattgttgttgacacatatgcaaaggct 142  Q
    |||||||||||||||| |||||||||||||||||    
T  51429444 tatgaaaattgttgttaacacatatgcaaaggct 51429411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 191
Target Start/End: Complemental strand, 28322252 - 28322176
Alignment:
Q  115 aattgttgttgacacatatgcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgccga 191  Q
    ||||||||||||||||||||||  |||| || ||||  ||||| |||  ||||| ||| || |||||||||||||||    
T  28322252 aattgttgttgacacatatgcattggctgagaaacacgagtaatttactcaaatgtccctcggtagttaactgccga 28322176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 41500248 - 41500184
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||||| | |||||||||| |||| | |||||||||||||||||||||||||||||    
T  41500248 gtagttaactgccgaggatcttctgctacaaatctggcataagctctctcatccattattcatct 41500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 2920530 - 2920465
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  2920530 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 2920465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 24512226 - 24512291
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  24512226 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 24512291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 16327345 - 16327431
Alignment:
Q  107 attatgaaaattgttgttgacacatatgcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgccgatg 193  Q
    |||||||||||||||||||||||||||||||||||| |  |||| | |||||  ||| |||||||| ||  | ||||||||||||||    
T  16327345 attatgaaaattgttgttgacacatatgcaaaggctgataaacacatgtaaaagataaaaatatccctcgatggttaactgccgatg 16327431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 43491168 - 43491233
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||||||   ||||||| ||||||| | ||| ||||||||||||||||||||||||||    
T  43491168 gtagttaactgccgagaatcttctgttataaatctggcagaagctctctcatccattattcatctc 43491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 2648176 - 2648241
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||| |||||||| |||||||||| |||| | ||| || |||||||||| ||||||||||||    
T  2648176 gtagttaattgccgatgatcttctgctacaaatctggcagaaactctctcatcaattattcatctc 2648241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 10365806 - 10365746
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattc 237  Q
    |||||||| |||||| | |||| ||||| |||| | |||||||||||||||||||||||||    
T  10365806 gtagttaaatgccgaggatcttttgctacaaatctggcataagctctctcatccattattc 10365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 40055312 - 40055342
Alignment:
Q  112 gaaaattgttgttgacacatatgcaaaggct 142  Q
    |||||||||||||||||||||||||||||||    
T  40055312 gaaaattgttgttgacacatatgcaaaggct 40055342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 40679608 - 40679546
Alignment:
Q  180 gttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||| | |||||||||| |||| | | | || |||||||||||||||||||||||    
T  40679608 gttaactgccgaggatcttctgctacaaatctggaagaacctctctcatccattattcatctc 40679546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 29763233 - 29763168
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  29763233 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 29763168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 42572771 - 42572706
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  42572771 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 42572706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 14174923 - 14174860
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  14174923 agttaactgccgaggatcttctgctaaaaatctggcagaagctctctcatccattattcatctc 14174860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 27487678 - 27487615
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  27487678 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 27487615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 49927513 - 49927451
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    |||||||| |||| | |||||||||| |||| | ||| |||||||||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 49927451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 13147557 - 13147620
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||| ||||| |||||||||| |||| | | | || |||||||||||||||||||||||    
T  13147557 agttaactgtcgatgatcttctgctacaaatctggtaaaaactctctcatccattattcatctc 13147620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 26637252 - 26637205
Alignment:
Q  195 tcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  26637252 tcttctgctacaaatctggcagaagctctctcatccattattcatctc 26637205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 6434802 - 6434872
Alignment:
Q  172 cttccgtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||| ||||||||||||| | | |||||||||| |||| | | | |||| |||||||||||||||||||||    
T  6434802 cttcggtagttaactgccaaggatcttctgctacaaatctggtagaagcactctcatccattattcatctc 6434872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 29709324 - 29709260
Alignment:
Q  178 tagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||| | | | |||| |||||||||| | ||| ||||||| ||||||||||||||||||    
T  29709324 tagttaactgtcaaagatcttttgctataaatctagcagaagctctttcatccattattcatctc 29709260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 49395662 - 49395714
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatc 229  Q
    ||||||||||||||| | |||||||||| |||| | ||| |||||||||||||    
T  49395662 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatc 49395714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 55207677 - 55207613
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||||| | |||||||||| |||| | ||| |||||||||||||||||||||||||    
T  55207677 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 55207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 34694446 - 34694383
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||| | ||| ||||||||||||||||||||||||||    
T  34694446 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 34694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 41577129 - 41577199
Alignment:
Q  172 cttccgtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||| ||||| ||||||||| | |||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  41577129 cttcggtagtaaactgccgaggatcttctgctacaaatcttgcagaagctctctcatccattatccatctc 41577199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 51696588 - 51696523
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||  |||| | ||| ||||||||||||||||||||||||||    
T  51696588 gtagttaactgccgaggatcttctgctgcaaatctggcagaagctctctcatccattattcatctc 51696523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 41803057 - 41803121
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||||| | |||| ||||| |||| | ||| |||||||||||||||||||||||||    
T  41803057 gtagttaactgccgaggatcttttgctacaaatctggcagaagctctctcatccattattcatct 41803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 51402412 - 51402348
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||||| | |||||||||| |||| |  || |||||||||||||||||||||||||    
T  51402412 gtagttaactgccgaggatcttctgctacaaatctgtcagaagctctctcatccattattcatct 51402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 19454363 - 19454300
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||| ||| |||| | ||| ||||||||||||||||||||||||||    
T  19454363 agttaactgccgaggatcttctactacaaatctggcagaagctctctcatccattattcatctc 19454300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 13896890 - 13896825
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | | |||| ||| |||| | ||| ||||||||||||||||||||||||||    
T  13896890 gtagttaactgccgaagattttctactacaaatctggcagaagctctctcatccattattcatctc 13896825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 24703427 - 24703374
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccat 232  Q
    ||||||||||||||| |||||||||| |||| | ||| ||||||||||||||||    
T  24703427 agttaactgccgatgatcttctgctacaaatctggcagaagctctctcatccat 24703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 43476251 - 43476316
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||| ||||| |||| |  || ||||||||||||||||||||||||||    
T  43476251 gtagttaactgccgaggatcttttgctacaaatctgacagaagctctctcatccattattcatctc 43476316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 45101862 - 45101797
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||  ||||||||||||    
T  45101862 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatatattattcatctc 45101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 49609442 - 49609507
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| |  ||||||||| |||| | ||||||||||||| || |||||||||||||    
T  49609442 gtagttaactgccgaggaacttctgctacaaatctggcataagctctcttattcattattcatctc 49609507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 55385196 - 55385261
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||| ||| | |||||||||| |||| | ||| |||||||||||||||||||| |||||    
T  55385196 gtagttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattaatctc 55385261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 2426561 - 2426608
Alignment:
Q  195 tcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | ||| |||||||||||| |||||||||||||    
T  2426561 tcttctgctataaatttggcagaagctctctcattcattattcatctc 2426608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 7245155 - 7245216
Alignment:
Q  181 ttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||   |||||||||| |||| |  || ||||||||||||||||||||||||||    
T  7245155 ttaactgccgagtatcttctgctacaaatctgacagaagctctctcatccattattcatctc 7245216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 43568925 - 43568990
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||| || | ||||||| || |||| |  || ||||||||||||||||||||||||||    
T  43568925 gtagttaactgctgaggatcttctgttacaaatctgacagaagctctctcatccattattcatctc 43568990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 52570580 - 52570515
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||| ||| |||| | ||| || ||||||||| |||||||||||||    
T  52570580 gtagttaactgccgaggatcttctactacaaatctggcagaaactctctcattcattattcatctc 52570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 18442234 - 18442202
Alignment:
Q  110 atgaaaattgttgttgacacatatgcaaaggct 142  Q
    ||||||||||||||| |||||||||||||||||    
T  18442234 atgaaaattgttgttaacacatatgcaaaggct 18442202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 19487308 - 19487276
Alignment:
Q  110 atgaaaattgttgttgacacatatgcaaaggct 142  Q
    ||||||||||||||| |||||||||||||||||    
T  19487308 atgaaaattgttgttaacacatatgcaaaggct 19487276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 41137785 - 41137829
Alignment:
Q  195 tcttctgctataaatattgcataagctctctcatccattattcat 239  Q
    |||||||||| |||| | ||| |||||||||||||||||||||||    
T  41137785 tcttctgctacaaatctggcagaagctctctcatccattattcat 41137829  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 3395927 - 3395990
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||||| ||| || |||||||||||||||||||||||    
T  3395927 agttaactgccgaggatcttctgctacaaatatggcagaaactctctcatccattattcatctc 3395990  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 41274651 - 41274716
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||||||   |||||| |||||||| | ||| ||||||||||||||||||||||||||    
T  41274651 gtagttaactgccgagaatcttctactataaatctggcagaagctctctcatccattattcatctc 41274716  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 18441453 - 18441390
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||| | |||||||||| |||| | ||| || |||||||||||||||||||||||    
T  18441453 agttaactgccgaggatcttctgctacaaatctggcagaaactctctcatccattattcatctc 18441390  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 26451539 - 26451601
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcat 239  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||||||||||||| |||||||||    
T  26451539 gtagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatctattattcat 26451601  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 41858135 - 41858073
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||| ||| | |||||||||| |||| | ||| |||||||||||||||||||||||||    
T  41858135 agttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 41858073  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 42602519 - 42602583
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    ||||||||||||||| | ||||||| || |||| |  |||||| | |||||||||||||||||||    
T  42602519 gtagttaactgccgaggatcttctgatacaaatctgacataagttgtctcatccattattcatct 42602583  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 12783971 - 12783906
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | | | ||||||||||||||||||||||||||    
T  12783971 gtagttaactgccgaggatcttctgctacaaatctggaaaaagctctctcatccattattcatctc 12783906  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 13401545 - 13401610
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||| |||| | |||||||||| ||||||  || ||||||||||||||||||||||||||    
T  13401545 gtagttaactaccgaggatcttctgctacaaatatgacagaagctctctcatccattattcatctc 13401610  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 29061331 - 29061394
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||| |||| | |||||||||| |||| | | | ||||||||||||||||||||||||||    
T  29061331 agttaacttccgaggatcttctgctacaaatctggtagaagctctctcatccattattcatctc 29061394  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 32034404 - 32034341
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| |||||||||| |||| | ||| ||| ||||| ||||||||||| ||||    
T  32034404 agttaactgccgatgatcttctgctacaaatctggcagaagatctcttatccattattcgtctc 32034341  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 29065791 - 29065852
Alignment:
Q  181 ttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||| ||| | |||||||||| |||| | ||  ||||||||||||||||||||||||||    
T  29065791 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29065852  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 29074804 - 29074865
Alignment:
Q  181 ttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||| ||| | |||||||||| |||| | ||  ||||||||||||||||||||||||||    
T  29074804 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29074865  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 29079568 - 29079629
Alignment:
Q  181 ttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||| ||| | |||||||||| |||| | ||  ||||||||||||||||||||||||||    
T  29079568 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29079629  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 29107377 - 29107438
Alignment:
Q  181 ttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||| ||| | |||||||||| |||| | ||  ||||||||||||||||||||||||||    
T  29107377 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29107438  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 30258453 - 30258377
Alignment:
Q  112 gaaaattgttgttgacacatatgcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgc 188  Q
    |||||||||||| |||||||||| ||||| | |  |||| |||||| |||| |||||||| ||| | ||||||||||    
T  30258453 gaaaattgttgtcgacacatatggaaaggttgaaaaacacaagtaatttatccaaatatcattcggcagttaactgc 30258377  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 542804 - 542739
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| ||| ||||||||||||||||||||||    
T  542804 gtagttaactgccgaggatcttctgctacaaatctggcagaagttctctcatccattattcatctc 542739  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 18307313 - 18307378
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| |||| |||||||||||||||||||||    
T  18307313 gtagttaactgccgaggatcttctgctacaaatctggcagaagccctctcatccattattcatctc 18307378  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 35564320 - 35564381
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattca 238  Q
    |||||||||||| || | |||||||||| |||| | ||||||||||||||||||||||||||    
T  35564320 gtagttaactgctgaggatcttctgctacaaatctggcataagctctctcatccattattca 35564381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 18155591 - 18155501
Alignment:
Q  100 tcaattgattatgaaaattgttgttgacacatatgcaaaggcttaggaacaaaagtaaattatacaaatatccttccgtagttaactgccga 191  Q
    ||||| |||| |||||||| ||||||||||||||||||||||| || ||||  |||||||||  ||||||||| || | |||||||| ||||    
T  18155591 tcaatagattctgaaaattattgttgacacatatgcaaaggctgagaaacacgagtaaatta-gcaaatatccctcggcagttaactaccga 18155501  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 241
Target Start/End: Complemental strand, 42865816 - 42865754
Alignment:
Q  179 agttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatct 241  Q
    |||||| |||||| | |||||||||| |||| | ||| |||||||||||||||||||||||||    
T  42865816 agttaattgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 42865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 25497570 - 25497635
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    |||||||||||||||   |||||||||| ||||   ||| ||||||||||||||||||||||||||    
T  25497570 gtagttaactgccgagaatcttctgctacaaatcaggcagaagctctctcatccattattcatctc 25497635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 6628404 - 6628372
Alignment:
Q  110 atgaaaattgttgttgacacatatgcaaaggct 142  Q
    ||||||||||||||| |||||||||||||||||    
T  6628404 atgaaaattgttgttcacacatatgcaaaggct 6628372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 18913 - 18848
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagctctctcatccattattcatctc 242  Q
    ||||||||||| ||| | |||||||||| |||| | ||| ||||| ||||||||||||||||||||    
T  18913 gtagttaactgtcgaggatcttctgctacaaatctggcagaagctttctcatccattattcatctc 18848  T

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Target: scaffold0192; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 19039 - 19007
Alignment:
Q  110 atgaaaattgttgttgacacatatgcaaaggct 142  Q
    |||||||||||||||||||||||||||||||||    
T  19039 atgaaaattgttgttgacacatatgcaaaggct 19007  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 12402 - 12336
Alignment:
Q  177 gtagttaactgccgatggtcttctgctataaatattgcataagct-ctctcatccattattcatctc 242  Q
    ||||||||||||||| | |||||||||| |||| | ||| || || |||||||||||||||||||||    
T  12402 gtagttaactgccgaggatcttctgctacaaatctggcagaatctactctcatccattattcatctc 12336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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