View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_34 (Length: 238)
Name: NF11732_low_34
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 57 - 187
Target Start/End: Complemental strand, 3995537 - 3995408
Alignment:
| Q |
57 |
gtgaatacattgagaaaatttgaacggttgattcaaaagcattaagacatcaaaaagccaccacgtgtcaacttccaaaaccctaattattaaacacaag |
156 |
Q |
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| T |
3995537 |
gtgaatacattgagaaaatctgaacggttgattcaaaaacattaagacatcaaaaagccaccacgtgtcaacttccaaaaccctaa-tattaaacacaag |
3995439 |
T |
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| Q |
157 |
ggtttaagagtttaagcactttcatttcatt |
187 |
Q |
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| T |
3995438 |
ggtttaagagtttaagcactttcatttcatt |
3995408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 3991863 - 3991829
Alignment:
| Q |
188 |
gtttcgatttcagaagcagccacacgcgatttttc |
222 |
Q |
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| T |
3991863 |
gtttcgatttcagaagcagccacaagcgatttttc |
3991829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 181
Target Start/End: Complemental strand, 35391932 - 35391820
Alignment:
| Q |
67 |
tgagaaaatttgaacggttgattcaaaagcattaagacatcaaaaagccaccacgtgtcaacttccaaaaccctaattattaaacacaagggtttaagag |
166 |
Q |
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| T |
35391932 |
tgagaaaatctaaacggttgattaaaaagcatcaagacatcaagaagccaccatgtgtcaacctccaaaacccaaattattaa--gaaagggtttaagag |
35391835 |
T |
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| Q |
167 |
tttaagcactttcat |
181 |
Q |
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| T |
35391834 |
tttaagcactttcat |
35391820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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