View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11732_low_39 (Length: 202)

Name: NF11732_low_39
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11732_low_39
NF11732_low_39
[»] chr1 (8 HSPs)
chr1 (17-199)||(28496048-28496230)
chr1 (74-199)||(36989342-36989467)
chr1 (75-199)||(12804511-12804635)
chr1 (75-199)||(42287119-42287243)
chr1 (75-199)||(4160379-4160503)
chr1 (75-199)||(12774939-12775063)
chr1 (75-199)||(50788819-50788943)
chr1 (73-151)||(31644056-31644134)
[»] chr8 (2 HSPs)
chr8 (75-199)||(5788723-5788847)
chr8 (135-199)||(33186737-33186801)
[»] chr7 (2 HSPs)
chr7 (75-199)||(40749392-40749516)
chr7 (93-199)||(44150818-44150924)
[»] chr2 (3 HSPs)
chr2 (72-199)||(42898300-42898427)
chr2 (73-199)||(40040791-40040917)
chr2 (75-199)||(38895857-38895981)
[»] chr4 (2 HSPs)
chr4 (73-199)||(22085504-22085630)
chr4 (75-148)||(30518148-30518221)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 3e-99; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 28496048 - 28496230
Alignment:
Q  17 attgatttatcacagaaacaaaagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctctt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496048 attgatttatcacagaaacaaaagattggtgaataaaaggagagtatattaaatattataccttgagaagagggtgccacagtcacatttgtattctctt 28496147  T
Q  117 gtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28496148 gtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctc 28496230  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 36989467 - 36989342
Alignment:
Q  74 ataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaa 173  Q
    |||||| || |||| ||| |||||||||||||||||||| |||||||||||| |||| | ||||||||||||||||||||| || |||||||| || |||    
T  36989467 atacctggaaaagatggttccacagtcacatttgtattcccttgtaccacatattttggaatgagctttccaatcagattgaacagcatatttcttagaa 36989368  T
Q  174 catttttcacatttccacttcttctc 199  Q
    || || |||||||||||||| |||||    
T  36989367 cacttatcacatttccactttttctc 36989342  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 12804511 - 12804635
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    |||||||||||||| ||||||||||||||| | || || || |||||||| || || | ||||||||||||||||||||| || |||||||| || ||||    
T  12804511 taccttgagaagagagtgccacagtcacatctatactccctagtaccacaagtcttagaatgagctttccaatcagattgaacagcatatttcttagaac 12804610  T
Q  175 atttttcacatttccacttcttctc 199  Q
    | ||||||||||||||||| |||||    
T  12804611 acttttcacatttccactttttctc 12804635  T

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Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 42287243 - 42287119
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    ||||| ||||||||||||||||| |||||| | |||||||| |||||||| || || | ||| |||||||| |||||||| || |||||||| || || |    
T  42287243 tacctagagaagagggtgccacaatcacatctatattctctagtaccacaagtcttagaatgtgctttccagtcagattgaacagcatatttctttgagc 42287144  T
Q  175 atttttcacatttccacttcttctc 199  Q
    |||||||||||||||||||||||||    
T  42287143 atttttcacatttccacttcttctc 42287119  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 4160503 - 4160379
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    ||||||||||||||||| ||||||||||| || || ||| | || |||||  |||| | ||||||||||||||| || || |||||||||  ||| ||||    
T  4160503 taccttgagaagagggttccacagtcacacttatactctttagtgccacaaattttggaatgagctttccaatccgactgaactgcatatcgtttagaac 4160404  T
Q  175 atttttcacatttccacttcttctc 199  Q
    |||| ||||| ||||||||||||||    
T  4160403 atttctcacacttccacttcttctc 4160379  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 12775063 - 12774939
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    ||||| |||||||| ||||||||||||||| | || ||  | |||||||| ||||| | ||||||||||||||||||||| || ||||| || || ||||    
T  12775063 tacctggagaagagagtgccacagtcacatctatactccttagtaccacaagttttagaatgagctttccaatcagattgaacagcatacttcttagaac 12774964  T
Q  175 atttttcacatttccacttcttctc 199  Q
    | |||||||| ||||| || |||||    
T  12774963 acttttcacacttccattttttctc 12774939  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 50788819 - 50788943
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    ||||| |||||||| ||||||||||||||  | |||||||| || ||||| || || | ||| || |||||||||||||| || ||||| || || || |    
T  50788819 tacctggagaagagagtgccacagtcacacctatattctctggtgccacaagtcttagaatgtgccttccaatcagattgaacagcatacttcttagagc 50788918  T
Q  175 atttttcacatttccacttcttctc 199  Q
    | || ||||| ||||| ||||||||    
T  50788919 acttatcacacttccatttcttctc 50788943  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 31644056 - 31644134
Alignment:
Q  73 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcaga 151  Q
    ||||||| || || ||||| ||||| |||||||| |||||||  |||||||| ||||| |  |||||||||||||||||    
T  31644056 tatacctggaaaaaagggtaccacaatcacatttatattctcgagtaccacaggttttagagtgagctttccaatcaga 31644134  T

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Target: chr8 (Bit Score: 73; Significance: 1e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 5788723 - 5788847
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    ||||||||||||||||| |||||||||||| | |||||||| || ||||| ||||| | ||||||||||||||||||||| || |||||||| || ||||    
T  5788723 taccttgagaagagggttccacagtcacatctatattctctagtgccacaagttttggaatgagctttccaatcagattgaacagcatatttctttgaac 5788822  T
Q  175 atttttcacatttccacttcttctc 199  Q
    | |||||||||||||||||||||||    
T  5788823 acttttcacatttccacttcttctc 5788847  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 33186801 - 33186737
Alignment:
Q  135 tgagctttccaatcagattggactgcatattttttggaacatttttcacatttccacttcttctc 199  Q
    |||||||||||||||||||| || |||||||| || |||||||| |||||||||||||| |||||    
T  33186801 tgagctttccaatcagattgaacagcatatttcttagaacatttctcacatttccactttttctc 33186737  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 40749516 - 40749392
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    |||||||||||||| || ||||| ||||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||    
T  40749516 taccttgagaagagtgtaccacaatcacacttatattctctagtaccacaagttttagtgtgagctttccaatcagattggactgcatatttcttggaac 40749417  T
Q  175 atttttcacatttccacttcttctc 199  Q
    | || ||||| ||||| ||||||||    
T  40749416 acttatcacacttccatttcttctc 40749392  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 44150818 - 44150924
Alignment:
Q  93 ccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaacatttttcacatttccact 192  Q
    ||||| |||||||||||||| || |||||||| |||||    ||||| |||||||| ||||| || |||||| |||| || || || ||||||||||| |    
T  44150818 ccacaatcacatttgtattccctagtaccacaagttttctggtgagccttccaatctgattgaacagcatatcttttagagcacttgtcacatttccatt 44150917  T
Q  193 tcttctc 199  Q
    |||||||    
T  44150918 tcttctc 44150924  T

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Target: chr2 (Bit Score: 64; Significance: 3e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 72 - 199
Target Start/End: Complemental strand, 42898427 - 42898300
Alignment:
Q  72 ttataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgg 171  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||| |  ||||||||||| || ||||| |||||||| || || |    
T  42898427 ttataccttgagaagagggttccacagtcacatctgtattctcttgtgccacaggttttggagtgagctttccagtctgattgaactgcatacttcttag 42898328  T
Q  172 aacatttttcacatttccacttcttctc 199  Q
    | || || ||||||||||||||||||||    
T  42898327 agcacttgtcacatttccacttcttctc 42898300  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 40040917 - 40040791
Alignment:
Q  73 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 172  Q
    ||||||| ||||| || |||||||| |||||| |||| ||| | || |||||  | ||  ||||||| |||||||||||||| ||||||||||| || ||    
T  40040917 tatacctggagaatagtgtgccacaatcacatctgtactctttagtgccacaaatcttactatgagccttccaatcagattgaactgcatatttcttaga 40040818  T
Q  173 acatttttcacatttccacttcttctc 199  Q
    ||| || ||||| ||||||||||||||    
T  40040817 acacttatcacacttccacttcttctc 40040791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 199
Target Start/End: Original strand, 38895857 - 38895981
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttggaac 174  Q
    |||||||| ||||  |||||||| ||||||||||||||||| |||||||| || ||||  || ||||||||||| ||||| || |||||   ||| || |    
T  38895857 taccttgaaaagatagtgccacaatcacatttgtattctctagtaccacaagtctttgagtgtgctttccaatccgattgaacagcataaaattttgagc 38895956  T
Q  175 atttttcacatttccacttcttctc 199  Q
    | || ||||| ||||||||||||||    
T  38895957 acttctcacacttccacttcttctc 38895981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 73 - 199
Target Start/End: Original strand, 22085504 - 22085630
Alignment:
Q  73 tataccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatcagattggactgcatattttttgga 172  Q
    ||||||| ||||| |  |||||||| ||||||||||| ||||| || |||||  | ||  |||||||||||||||||||||| ||||||||||| |||||    
T  22085504 tatacctggagaaaattgtgccacaatcacatttgtactctctagttccacaaatcttgctatgagctttccaatcagattgaactgcatatttcttgga 22085603  T
Q  173 acatttttcacatttccacttcttctc 199  Q
    ||| |||||||| ||||||||||||||    
T  22085604 acacttttcacacttccacttcttctc 22085630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 30518148 - 30518221
Alignment:
Q  75 taccttgagaagagggtgccacagtcacatttgtattctcttgtaccacatgtttttgtatgagctttccaatc 148  Q
    |||||||| ||||  || ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||    
T  30518148 taccttgaaaagatagttccacagtcacatttgtattctctagtaccacatgtttttgagtgagctttccaatc 30518221  T

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