View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11732_low_6 (Length: 584)

Name: NF11732_low_6
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11732_low_6
NF11732_low_6
[»] chr7 (5 HSPs)
chr7 (1-135)||(27658121-27658255)
chr7 (476-567)||(33602264-33602355)
chr7 (297-410)||(33602421-33602528)
chr7 (213-272)||(27656844-27656903)
chr7 (518-563)||(33602132-33602177)
[»] chr5 (5 HSPs)
chr5 (1-135)||(37605809-37605941)
chr5 (7-123)||(33360991-33361104)
chr5 (213-276)||(37606029-37606092)
chr5 (7-123)||(5742432-5742545)
chr5 (233-275)||(30891764-30891806)
[»] scaffold0856 (1 HSPs)
scaffold0856 (7-123)||(1238-1351)
[»] chr6 (2 HSPs)
chr6 (7-123)||(18085267-18085380)
chr6 (213-276)||(31559483-31559546)
[»] chr4 (1 HSPs)
chr4 (238-275)||(7453567-7453604)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 27658255 - 27658121
Alignment:
Q  1 gaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27658255 gaccgaaaatagcatgagagggtggcactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaa 27658156  T
Q  101 atgagtgaatcagagagagggaaggaaaacgaaac 135  Q
    ||||||||||||||||||| |||||||||||||||    
T  27658155 atgagtgaatcagagagagagaaggaaaacgaaac 27658121  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 476 - 567
Target Start/End: Complemental strand, 33602355 - 33602264
Alignment:
Q  476 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatttggaaaatcaacgtaacagagcaatttcgttttag 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33602355 catgaatggtgaatccgaaattggtaagtgtttattatttgcttgtagttttggatctggaaaatcaacgtaacagagcaatttcgttttag 33602264  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 297 - 410
Target Start/End: Complemental strand, 33602528 - 33602421
Alignment:
Q  297 aaaaacatatttaatcgtttaatatttcatttcactatttcgctatttgccagctcatacttctaaccgtttcttattcacttttgccgccatataacaa 396  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33602528 aaaaacatatttaatcgtttaatatttcatttcat------gctatttgccagctcatacttctaatcgtttcttattcacttttgccgccatataacaa 33602435  T
Q  397 accatatttcattt 410  Q
    ||||||||||||||    
T  33602434 accatatttcattt 33602421  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 213 - 272
Target Start/End: Complemental strand, 27656903 - 27656844
Alignment:
Q  213 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcatt 272  Q
    ||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  27656903 tattgaggaacagtctatggtatcatttttgtgtttgtatttttgtgtttacttatcatt 27656844  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 518 - 563
Target Start/End: Complemental strand, 33602177 - 33602132
Alignment:
Q  518 ttgtagttttggatttggaaaatcaacgtaacagagcaatttcgtt 563  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  33602177 ttgtagttttggatctggaaaatcaacgtaacagagcaatttcgtt 33602132  T

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Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 37605809 - 37605941
Alignment:
Q  1 gaccgaaaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaa 100  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||    
T  37605809 gaccgaaaatagcatgag--ggtggcactgtacaaagatgaagaaggagtgacgagaacctatgagtgaatgaaagatgattttttcttgctcataggaa 37605906  T
Q  101 atgagtgaatcagagagagggaaggaaaacgaaac 135  Q
    |||||||| ||||| ||||||||||||||||||||    
T  37605907 atgagtgattcagaaagagggaaggaaaacgaaac 37605941  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 33360991 - 33361104
Alignment:
Q  7 aaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagt 106  Q
    ||||||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | || |||||||| |    
T  33360991 aaatagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaatgggaaatgact 33361087  T
Q  107 gaatcagagagagggaa 123  Q
    |||||||| ||||||||    
T  33361088 gaatcagaaagagggaa 33361104  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 37606029 - 37606092
Alignment:
Q  213 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 276  Q
    |||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  37606029 tattgagtaacagtgtatggtgtcatatttgtgtttgtattattgtgtttacttatcattcctg 37606092  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 5742545 - 5742432
Alignment:
Q  7 aaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagt 106  Q
    ||||||||||||||||||| |||| ||||||||||||   |||||| ||| | |||  |||||||||||||| ||| |||||| || ||||||||| |||    
T  5742545 aaatagcatgagagggtggcactgcacaaagatgaag---gagtgatgagcaactactagtgaatgaaagatgattagttctttctcataggaaattagt 5742449  T
Q  107 gaatcagagagagggaa 123  Q
    |||||||| ||||||||    
T  5742448 gaatcagaaagagggaa 5742432  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 30891806 - 30891764
Alignment:
Q  233 tgtcatttttgtgtttgtatttttgtgtttacttatcattcct 275  Q
    |||| |||||||||||||||||||||||| |||||||||||||    
T  30891806 tgtcgtttttgtgtttgtatttttgtgttcacttatcattcct 30891764  T

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Target: scaffold0856 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 1238 - 1351
Alignment:
Q  7 aaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagt 106  Q
    ||||||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | || |||||||| |    
T  1238 aaatagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagatgatttgttcttgatcatgggaaatgact 1334  T
Q  107 gaatcagagagagggaa 123  Q
    |||||||| ||||||||    
T  1335 gaatcagaaagagggaa 1351  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 123
Target Start/End: Original strand, 18085267 - 18085380
Alignment:
Q  7 aaatagcatgagagggtggtactgtacaaagatgaagaaggagtgacgagaagctatgagtgaatgaaagataatttgttcttgcttataggaaatgagt 106  Q
    ||||||||||||||| ||| |||| ||||||||||||   ||||||||||||  ||| |||||||||||||| ||||||||||| | || |||||||| |    
T  18085267 aaatagcatgagaggctggcactgcacaaagatgaag---gagtgacgagaaattattagtgaatgaaagattatttgttcttggtaatgggaaatgact 18085363  T
Q  107 gaatcagagagagggaa 123  Q
    |||||||| ||||||||    
T  18085364 gaatcagaaagagggaa 18085380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 31559546 - 31559483
Alignment:
Q  213 tattgagtaatagtgtatggtgtcatttttgtgtttgtatttttgtgtttacttatcattcctg 276  Q
    |||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  31559546 tattgagtaacagtgtatggtgtcatatttatgtttgtattattgtgtttacttatcattcctg 31559483  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 7453604 - 7453567
Alignment:
Q  238 tttttgtgtttgtatttttgtgtttacttatcattcct 275  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7453604 tttttgtgtttgtatttttgtgttcacttatcattcct 7453567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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