View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_8 (Length: 573)
Name: NF11732_low_8
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 50510261 - 50510596
Alignment:
| Q |
18 |
cacagcgaggatggcaattttagtattgtaattgttaatttgttagtttatgttgaatgtggaagtcgaacctgaaaccaactttatcactctatttatt |
117 |
Q |
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| T |
50510261 |
cacagcgaggatggcaattttagtattgtaattgttaatttgttagtttatgttgaatgtggaagtcgaacctgaaaccaactttatcactctatttatt |
50510360 |
T |
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| Q |
118 |
tatt----cttttgtcttagccatcaggtcaaccttattagtctttcttttttgaattgttaattttcgtaagtagataaaaaattaaggatgaatacac |
213 |
Q |
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| T |
50510361 |
tatttattcttttgtcttagccatcaggtcaacctta---gtctttcttttttgaattgttaattttcgtaagtggataaaaaatgaaggatgaatacac |
50510457 |
T |
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| Q |
214 |
cactacttgaattaggaacaagtatcatccgtctcaatgtgtcccttattacccacccttatcatttgtctattatcaacttgaaataatcacttattta |
313 |
Q |
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| T |
50510458 |
cactacttgaattaggaacaagtatcatccgtctcaatgtgtcccttattacccacccttatcatttgtctattatcaacttgaaataaccacttactta |
50510557 |
T |
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| Q |
314 |
catattctgatgcacatatggtaagagttaagacaaaaa |
352 |
Q |
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| T |
50510558 |
catattcttatgcacatatggtaagagttaagacaaaaa |
50510596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 348 - 535
Target Start/End: Original strand, 50510827 - 50511014
Alignment:
| Q |
348 |
aaaaaactacaccaatgaagatactagcacgcttatactattgttggcaacaaagcaagtgacccaacgaataacctcaccaagaagaggacaccatgat |
447 |
Q |
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| T |
50510827 |
aaaaaactacaccaatgaagatactagcacacttatactattgttggcaacaaagcaaatgacccaacgaataacctcaccaagaagaggacaccatgat |
50510926 |
T |
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| Q |
448 |
ttacttgcaaaccaagaaatcaagcaaccgaataaaatacatacttgcacacctatccataacatcaattttttgttaagatattttt |
535 |
Q |
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| T |
50510927 |
ttacttgcaaaccaagaaatcaagcaaccgaataaaatacatacttgcacacctatccataacatcaattttttgttaagatattttt |
50511014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 348 - 403
Target Start/End: Original strand, 9670752 - 9670807
Alignment:
| Q |
348 |
aaaaaactacaccaatgaagatactagcacgcttatactattgttggcaacaaagc |
403 |
Q |
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| T |
9670752 |
aaaaaattacaccaatcaagatactagcacacttctactattgtctgcaacaaagc |
9670807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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