View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11732_low_9 (Length: 565)
Name: NF11732_low_9
Description: NF11732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11732_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 24401212 - 24401758
Alignment:
| Q |
1 |
tgtaatgtcattcataccggatctccatggcatgacatgggtttcaattattgctgcactcatgtcctttacatattcattcattggactaggacttggc |
100 |
Q |
| |
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||||||||| |||||||||||||||||| |||| | ||||||||| || |||| ||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
24401212 |
tgtaatgtcgttcataccggatctccataacatggcttgggtttcagttgttgccgcactaatgtcctttacatactcattcattggactaggacttggc |
24401311 |
T |
|
| Q |
101 |
atagcaacagtcataagtaaggctcatcttcactcaatttctggagattttagattatgcttattttttaatttcaagcctcttgataattaaagcaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401312 |
atagcaacagtcataagtaaggctcatcttcactcaatttctgtcaatttcagattatgcttattttttaatttcaagcctcttgataattaaagcaaca |
24401411 |
T |
|
| Q |
201 |
ccatataacaaccaaacccttttttaactaactgagttagctacataaatcaaacaatgtcatagagacaagcactccctaaattatagatattcagttt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24401412 |
ccatataacaaccaaacccttttttaactaactgagttagctacataaatcaaacaatgtcatagagacaaacactccctaaattatagatattcagttt |
24401511 |
T |
|
| Q |
301 |
gatcgcataagtatttttagatcggtcaatttagttcctgaatataaactgtcatgaatcatgaaccagatctaaagatatacatttaaataaagatatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401512 |
gatcgcataagtatttttagatcggtcaatttagttcctgaatataaactgtcatgaatcatgaaccagatctaaagatatacatttaaataaagatatt |
24401611 |
T |
|
| Q |
401 |
gcttaattggttctatagttaaagcaacatcacgacggnnnnnnntattagtatcccaaaatcgatattatgcaactataaatattcatacttcatagga |
500 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401612 |
gcttaattggttctatagttaaagcaacatcatgacgtaaaaaaatattagtatcccaaaatcgatattatgcaactataaatattcatacttcatagga |
24401711 |
T |
|
| Q |
501 |
ctttggttgcacttgcagaaaatggaaaagttatgggaagtttgaca |
547 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401712 |
ctttggttgcacttgcagaaaatggaaaagttatgggaagtttgaca |
24401758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 24378378 - 24378728
Alignment:
| Q |
1 |
tgtaatgtcattcataccggatctccatggcatgacatgggtttcaattattgctgcactcatgtcctttacatattcattcattggactaggacttggc |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| | ||||||||||| ||||||||||||||||| ||||||||| |
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| T |
24378378 |
tgtaatgtcattcataccggatcttcatagcatgacatgggtttcagttgttgctgcaataatgtcctttacttattcattcattggacttggacttggc |
24378477 |
T |
|
| Q |
101 |
atagcaacagtcataagtaaggctcatcttcactcaatttctggagattttagattatg------cttattttttaatttcaagcctcttgataattaaa |
194 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| || ||||||| ||||||| ||| ||||||||| |||| |
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|
| T |
24378478 |
atagcaacagtcataagtaagtctcatcttcactcaatttctgttaatttaagattctgatttttcttatttcttaattttaagtctcttgatagttaag |
24378577 |
T |
|
| Q |
195 |
gcaacaccatataacaaccaaacccttttttaactaactgagttagctacataaatcaaacaatgtcatagagacaagcac--------tccctaaatta |
286 |
Q |
| |
|
||| || |||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| ||||| || ||| ||||||||||| |
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| T |
24378578 |
gcagcatcatataacaaccaaacccttttttcgctaaacgagtcagctacattaatcaaacaatgtcgtagagtgaaacactgagtcagtccctaaatta |
24378677 |
T |
|
| Q |
287 |
tagatattcagtttgatcgcataagtatttttagatcggtcaatttagttc |
337 |
Q |
| |
|
|||| || |||||||||| |||||| ||||| ||| |||||||||||||| |
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|
| T |
24378678 |
tagaccttgagtttgatcgtataagtctttttggataggtcaatttagttc |
24378728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 24413788 - 24413930
Alignment:
| Q |
1 |
tgtaatgtcattcataccggatctccatggcatgacatgggtttcaattattgctgcactcatgtcctttacatattcattcattggactaggacttggc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| | ||||||||| || |||| ||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
24413788 |
tgtaatgtcgttcataccggatctccataacatggcttgggtttcagttgttgccgcactaatgtcctttacatactcattcattggactaggacttggc |
24413887 |
T |
|
| Q |
101 |
atagcaacagtcataagtaaggctcatcttcactcaatttctg |
143 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||||||||| |
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|
| T |
24413888 |
atatcaacagtcataagtaagactcattttcactcaatttctg |
24413930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 24420173 - 24420031
Alignment:
| Q |
1 |
tgtaatgtcattcataccggatctccatggcatgacatgggtttcaattattgctgcactcatgtcctttacatattcattcattggactaggacttggc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| | |||||||| || |||||||||| |||||||||||||| |||||||||||||||||||||||| |
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| T |
24420173 |
tgtaatgtcgttcataccggatctccataacatggcttgggtttcggttgttgctgcactaatgtcctttacatactcattcattggactaggacttggc |
24420074 |
T |
|
| Q |
101 |
atagcaacagtcataagtaaggctcatcttcactcaatttctg |
143 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||| ||||| |
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|
| T |
24420073 |
atatcaacagtcataagtaagactcattttcactcaaattctg |
24420031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 484 - 547
Target Start/End: Original strand, 24378901 - 24378964
Alignment:
| Q |
484 |
attcatacttcataggactttggttgcacttgcagaaaatggaaaagttatgggaagtttgaca |
547 |
Q |
| |
|
||||| ||||||||||| || ||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
24378901 |
attcacacttcataggaattgggttgcacttgcagaaaatggaagaattatgggaagtttgaca |
24378964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 42361626 - 42361723
Alignment:
| Q |
3 |
taatgtcattcataccggatctccatggcatgacatgggtttcaattattgctgcactcatgtcctttacatattcattcattggactaggacttggc |
100 |
Q |
| |
|
|||||||||||||||| || ||||| |||| ||| | ||||| || |||| || | |||||||||||||| |||| |||||||||||||||||| |
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| T |
42361626 |
taatgtcattcataccagacctccacaacatggcattgctttcagttgttgcagctgttatgtcctttacatactcatctattggactaggacttggc |
42361723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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