View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_high_11 (Length: 453)

Name: NF11733_high_11
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_high_11
NF11733_high_11
[»] chr7 (7 HSPs)
chr7 (10-437)||(8907843-8908273)
chr7 (356-427)||(31257036-31257107)
chr7 (358-437)||(11743038-11743117)
chr7 (356-412)||(48417535-48417591)
chr7 (316-412)||(21213061-21213159)
chr7 (356-435)||(23796181-23796260)
chr7 (356-428)||(2544451-2544523)
[»] chr5 (8 HSPs)
chr5 (356-427)||(20225049-20225120)
chr5 (373-427)||(25258306-25258360)
chr5 (373-427)||(25322096-25322150)
chr5 (373-427)||(33337460-33337514)
chr5 (378-435)||(6919426-6919482)
chr5 (378-435)||(24346734-24346791)
chr5 (373-437)||(1564562-1564626)
chr5 (373-437)||(15439012-15439076)
[»] chr4 (7 HSPs)
chr4 (393-436)||(5398177-5398220)
chr4 (373-428)||(30305299-30305354)
chr4 (356-427)||(36685880-36685951)
chr4 (373-427)||(18528222-18528276)
chr4 (378-435)||(21750274-21750331)
chr4 (380-433)||(43743251-43743304)
chr4 (355-411)||(35796998-35797054)
[»] chr2 (6 HSPs)
chr2 (373-427)||(8424913-8424967)
chr2 (373-427)||(25082542-25082596)
chr2 (373-434)||(15460999-15461060)
chr2 (356-427)||(15124788-15124859)
chr2 (356-435)||(36352156-36352235)
chr2 (356-412)||(40718227-40718283)
[»] chr8 (4 HSPs)
chr8 (378-427)||(8084392-8084441)
chr8 (356-424)||(16050037-16050105)
chr8 (356-426)||(34843125-34843195)
chr8 (373-437)||(3157554-3157618)
[»] chr6 (3 HSPs)
chr6 (356-437)||(6054177-6054258)
chr6 (356-428)||(27993646-27993719)
chr6 (356-412)||(9705028-9705084)
[»] chr3 (2 HSPs)
chr3 (373-437)||(20303059-20303123)
chr3 (356-412)||(13574941-13574997)
[»] chr1 (2 HSPs)
chr1 (373-428)||(46176751-46176806)
chr1 (373-427)||(25145490-25145544)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Complemental strand, 8908273 - 8907843
Alignment:
Q  10 atgaaaaggacttattcataaatgatattgatttgcattgata--acataactgcatttgtgaaataatttttcctttatgtatttcttaaccaattaat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8908273 atgaaaaggacttattcataaatgatattgatttgcattgatataacttaactgcatttgtgaaataatttttcctt-atgtatttcttaaccaattaat 8908175  T
Q  108 acctttaaaaccattgttaggaggatccttttacttatcatctttggaagcagtatgtaataatgaatgaggtttattttgtttagcttcaggcatccaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  8908174 acctttaaaaccattgttaggaggatccttttacttatcatctttggaggcagtatgtaataatgaacgaggtttattttgtttagcttcaggcatgcaa 8908075  T
Q  208 ttcttcttaggtcagatgattatgttaggnnnnnnngggaattgccaataattacataagcgttaaatatttgataacttaacctacaatacaaccagat 307  Q
    |||||||||||| ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8908074 ttcttcttaggtgagatgattatgttaggaaaaaaagggaattgccaataattacataagcgttaaatatttgataacttaacctacaatacaaccagat 8907975  T
Q  308 tatactattgttaaaaaatctcgcatcaaacaaacggttgcatgaaca--tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggtt 405  Q
    ||||||||||||||| |||||||||||||||||||| | |||||||||  ||||||||||||||||||||||||| |||| |||| ||||||||   |||    
T  8907974 tatactattgttaaagaatctcgcatcaaacaaacgatggcatgaacatgtgtttataaatgagagaaatcatcatctcataaattagttttgtatagtt 8907875  T
Q  406 gtgttagattcaaccacgattttcaagatgat 437  Q
    ||||||||||||| ||||||||||||||||||    
T  8907874 gtgttagattcaatcacgattttcaagatgat 8907843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 31257107 - 31257036
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    ||||||||| || | | |||| |||||||||||| |||||||||| |||||||||||| |||||||||||||    
T  31257107 tgtttataagtgggggcaatcttcacctcacaaaccagttttgtggggttgtgttagactcaaccacgattt 31257036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 11743038 - 11743117
Alignment:
Q  358 tttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 437  Q
    |||||||||| ||| ||||||||| ||||||| | ||||||||   |||||||||| | |||||||||||| ||||||||    
T  11743038 tttataaatgggagcaatcatcacatcacaaaccggttttgtggaattgtgttagacttaaccacgatttttaagatgat 11743117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 48417591 - 48417535
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 412  Q
    ||||||||| |||||| |||| | |||||||||| |||||||||| |||||||||||    
T  48417591 tgtttataagtgagagcaatcttgacctcacaaaccagttttgtggggttgtgttag 48417535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 412
Target Start/End: Complemental strand, 21213159 - 21213061
Alignment:
Q  316 tgttaaaaaatctcgcatcaaacaaacggttgcatgaacatgt--ttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 412  Q
    ||||||| |||| ||||||| | ||| | ||||||||||||||  |||||| || ||| |||||||||||||||| |  ||||||||  ||||||||||    
T  21213159 tgttaaagaatcccgcatcagataaaagattgcatgaacatgtgtttataagtgggagtaatcatcacctcacaagttggttttgtggagttgtgttag 21213061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 23796260 - 23796181
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatg 435  Q
    ||||||||| || | | ||||||||||||||||||   ||||||| |||||||||||  ||||||| |||||| ||||||    
T  23796260 tgtttataagtgggggcaatcatcacctcacaaattgattttgtggggttgtgttaggctcaaccatgatttttaagatg 23796181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 2544523 - 2544451
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatttt 428  Q
    ||||||||| || | | |||| ||||||||||| || |||||||| |||||||||||   |||||||||||||    
T  2544523 tgtttataagtgggggcaatcctcacctcacaagtcggttttgtggggttgtgttaggcccaaccacgatttt 2544451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 20225049 - 20225120
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    ||||||||||||||   |||| ||||||||||| ||  ||||||| ||||||||||| ||||||||||||||    
T  20225049 tgtttataaatgaggacaatcctcacctcacaagtcgattttgtggggttgtgttaggttcaaccacgattt 20225120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 25258360 - 25258306
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||| ||||||||||| || |||||||| |||||||||| | |||||||||||||    
T  25258360 aatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgattt 25258306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 25322150 - 25322096
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||| ||||||||||| || |||||||| |||||||||| | |||||||||||||    
T  25322150 aatcctcacctcacaagtcggttttgtggggttgtgttaaactcaaccacgattt 25322096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 33337514 - 33337460
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||| ||| |||||||| | |||||||| ||||||||||| ||||||||||||||    
T  33337514 aatcctcatctcacaaaccggttttgtggggttgtgttaggttcaaccacgattt 33337460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 6919482 - 6919426
Alignment:
Q  378 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatg 435  Q
    |||||||||||  |||||||||| |||||||||||  |||||||||||||| ||||||    
T  6919482 tcacctcacaag-cagttttgtgaggttgtgttaggctcaaccacgatttttaagatg 6919426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 24346791 - 24346734
Alignment:
Q  378 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatg 435  Q
    |||||||||||  | |||||||| ||||||||||||  ||||||||||||| ||||||    
T  24346791 tcacctcacaagccggttttgtggggttgtgttagacccaaccacgatttttaagatg 24346734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 1564626 - 1564562
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 437  Q
    |||| |||| ||||||  |||||||||| |||||||||||  |||||||||||||  ||||||||    
T  1564626 aatcctcacatcacaagacagttttgtggggttgtgttaggctcaaccacgatttctaagatgat 1564562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 437
Target Start/End: Original strand, 15439012 - 15439076
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 437  Q
    |||||||||||||||| |||||||| || |||||||||||    |||||||||||  ||||||||    
T  15439012 aatcatcacctcacaagtcagttttatggggttgtgttaggcctaaccacgatttataagatgat 15439076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 5398220 - 5398177
Alignment:
Q  393 gttttgtgcggttgtgttagattcaaccacgattttcaagatga 436  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  5398220 gttttgtggggttgtgttagattcaaccacgatttttaagatga 5398177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 30305299 - 30305354
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatttt 428  Q
    |||||||||||||||||||| |||||||  |||||||||   ||||||||||||||    
T  30305299 aatcatcacctcacaaatcaattttgtggagttgtgttatgctcaaccacgatttt 30305354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 36685951 - 36685880
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||||||||||| | |  ||| ||||||||||| ||||||||||| |||||| |||||  ||||||||||||    
T  36685951 tgtttataaatgggggttatcctcacctcacaagtcagttttgtggggttgtattagacccaaccacgattt 36685880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 18528276 - 18528222
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||| ||||||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  18528276 aatcctcacctcacaaatcgattttgtagggttgtgttagatccaaccacgattt 18528222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 435
Target Start/End: Complemental strand, 21750331 - 21750274
Alignment:
Q  378 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatg 435  Q
    |||||||||||| |||||||||| ||||||||||||  ||| ||||| ||| ||||||    
T  21750331 tcacctcacaaaccagttttgtgaggttgtgttagacccaatcacgaattttaagatg 21750274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 433
Target Start/End: Original strand, 43743251 - 43743304
Alignment:
Q  380 acctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaaga 433  Q
    |||||||||||| |||||||| ||||||||||||  ||| |||||||| |||||    
T  43743251 acctcacaaatcggttttgtggggttgtgttagacccaaacacgatttccaaga 43743304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 35797054 - 35796998
Alignment:
Q  355 atgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgtta 411  Q
    |||||||||| || | | |||| |||||||||||| |||||||||| ||||||||||    
T  35797054 atgtttataagtgggggcaatcctcacctcacaaaccagttttgtggggttgtgtta 35796998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 8424913 - 8424967
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    ||||||||||||||||| |||||||||| ||||||||||   |||||||||||||    
T  8424913 aatcatcacctcacaaaccagttttgtggggttgtgttaagctcaaccacgattt 8424967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 25082596 - 25082542
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    ||||||||||||||||  |||||||||| ||||||||||| | ||||||||||||    
T  25082596 aatcatcacctcacaagccagttttgtggggttgtgttaggtccaaccacgattt 25082542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 434
Target Start/End: Original strand, 15460999 - 15461060
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagat 434  Q
    ||||||||||||||||  |||||||||| |||||||||||| |||||||  ||||| |||||    
T  15460999 aatcatcacctcacaagacagttttgtggggttgtgttagactcaaccataatttttaagat 15461060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 15124859 - 15124788
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    ||||||||| |||| | |||| |||| |||||| || |||||||| ||||||||||||  ||||||||||||    
T  15124859 tgtttataagtgagggcaatcttcacttcacaattcggttttgtggggttgtgttagacccaaccacgattt 15124788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 435
Target Start/End: Complemental strand, 36352235 - 36352156
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatg 435  Q
    ||||||||| || | | ||||||||||||| ||  | |||||||| ||||||||||| ||||||||| ||||| ||||||    
T  36352235 tgtttataagtgggggcaatcatcacctcaaaagccggttttgtggggttgtgttaggttcaaccacaatttttaagatg 36352156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 40718283 - 40718227
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 412  Q
    ||||||||| |||| | ||||||||||||||||| | ||||||||  ||||||||||    
T  40718283 tgtttataagtgagggcaatcatcacctcacaaaccggttttgtggagttgtgttag 40718227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 427
Target Start/End: Original strand, 8084392 - 8084441
Alignment:
Q  378 tcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||||||||||| |||||||||| ||||||||||| | ||||||||||||    
T  8084392 tcacctcacaaaccagttttgtgaggttgtgttaggtccaaccacgattt 8084441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 424
Target Start/End: Original strand, 16050037 - 16050105
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacga 424  Q
    ||||||||| |||  | |||| ||||||||||| ||||||||||| ||||||||||||  |||||||||    
T  16050037 tgtttataagtgaaggcaatcctcacctcacaagtcagttttgtggggttgtgttagacccaaccacga 16050105  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 426
Target Start/End: Original strand, 34843125 - 34843195
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatt 426  Q
    ||||||||| || ||| |||| |||||||||||  | |||||||| |||||||||||| | ||||||||||    
T  34843125 tgtttataagtgggagcaatcctcacctcacaagccggttttgtggggttgtgttagactgaaccacgatt 34843195  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 3157618 - 3157554
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 437  Q
    |||| |||||||||||  |||||||||| |||||||||||  |||||||| ||||  ||||||||    
T  3157618 aatcctcacctcacaagccagttttgtggggttgtgttaggctcaaccaccatttataagatgat 3157554  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 6054177 - 6054258
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 437  Q
    ||||||||| ||||   ||||||||||||| || ||||||||||| | | |||||||| |||||||||||||  ||||||||    
T  6054177 tgtttataagtgaggacaatcatcacctcataagtcagttttgtgggatcgtgttagactcaaccacgatttctaagatgat 6054258  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 428
Target Start/End: Complemental strand, 27993719 - 27993646
Alignment:
Q  356 tgtttataaatgagagaaa-tcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatttt 428  Q
    |||||||||||||| |||| || ||||||||||| | ||||||||| ||||||||||||| || | ||||||||    
T  27993719 tgtttataaatgagggaaaatcctcacctcacaacttagttttgtgaggttgtgttagatccatctacgatttt 27993646  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Original strand, 9705028 - 9705084
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 412  Q
    ||||||||| || | | |||||||||||||||| || |||||||| |||||||||||    
T  9705028 tgtttataagtgggggcaatcatcacctcacaagtcggttttgtggggttgtgttag 9705084  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 20303123 - 20303059
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattttcaagatgat 437  Q
    |||| |||||||||||| | |||||||| | |||||||||  |||||||||||||| ||||||||    
T  20303123 aatcctcacctcacaaaccggttttgtgggattgtgttaggctcaaccacgatttttaagatgat 20303059  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 412
Target Start/End: Complemental strand, 13574997 - 13574941
Alignment:
Q  356 tgtttataaatgagagaaatcatcacctcacaaatcagttttgtgcggttgtgttag 412  Q
    ||||||||| || | |||||| |||||||||||  |||||||||| |||||||||||    
T  13574997 tgtttataagtgggggaaatcctcacctcacaagccagttttgtggggttgtgttag 13574941  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 46176751 - 46176806
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgatttt 428  Q
    |||||||| ||||||||||||||||||| | |||||||||  ||||||| ||||||    
T  46176751 aatcatcatctcacaaatcagttttgtgggtttgtgttaggctcaaccatgatttt 46176806  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 427
Target Start/End: Complemental strand, 25145544 - 25145490
Alignment:
Q  373 aatcatcacctcacaaatcagttttgtgcggttgtgttagattcaaccacgattt 427  Q
    |||| ||||||||||| || |||||||| ||||||||||||  ||||||||||||    
T  25145544 aatcctcacctcacaagtcggttttgtgaggttgtgttagacccaaccacgattt 25145490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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