View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_high_15 (Length: 404)

Name: NF11733_high_15
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_high_15
NF11733_high_15
[»] chr7 (7 HSPs)
chr7 (126-386)||(47472630-47472890)
chr7 (215-386)||(47475974-47476143)
chr7 (8-62)||(47472512-47472566)
chr7 (215-380)||(24802078-24802241)
chr7 (139-186)||(24801978-24802025)
chr7 (139-186)||(47475874-47475921)
chr7 (330-386)||(47485573-47485629)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 126 - 386
Target Start/End: Original strand, 47472630 - 47472890
Alignment:
Q  126 ggtgtaaagacaagagtgtacatagttctactcttgattgatcagtgcacaacgatagaagtatacagagcatactaatttgttcaggcttcagattaac 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47472630 ggtgtaaagacaagagtgtacatagttctactcttgattgatcagtgcacaacgatagaagtatacagagcatactaatttgttcaggcttcagattaac 47472729  T
Q  226 aaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttcgnnnnnnntat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  47472730 aaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttcgaaaaaaatat 47472829  T
Q  326 gcatatttttcacttaccgggaataggcacaacatcctttccttgttggagtacccatgct 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47472830 gcatatttttcacttaccgggaataggcacaacatcctttccttgttggagtacccatgct 47472890  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 215 - 386
Target Start/End: Original strand, 47475974 - 47476143
Alignment:
Q  215 ttcagattaacaaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttc 314  Q
    |||||||| |||||||||| |||  |||||||||||||||||||||||||||||| ||||||   ||| |||||||| |||||   | |||||| |||||    
T  47475974 ttcagattcacaaataagaggaatactcatatttctgatactgttaggataccagttaagagc--ctaccatcaaagatttttatgagaatactgttttc 47476071  T
Q  315 gnnnnnnntatgcatatttt-tcacttaccgggaataggcacaacatcctttccttgttggagtacccatgct 386  Q
    |       | |||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||    
T  47476072 gaaaaat-tgtgcatattttgtcactcaccaggaataggcacaacatccttgccttgttggagtacccatgct 47476143  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 47472512 - 47472566
Alignment:
Q  8 gacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgca 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47472512 gacgtaggaacaattgaccagattacgtgataaatcatttatgttcttctgtgca 47472566  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 380
Target Start/End: Original strand, 24802078 - 24802241
Alignment:
Q  215 ttcagattaacaaataagacgaaatctcatatttctgatactgttaggataccagctaagagtagctagcatcaaaggtttttgcaataatactattttc 314  Q
    |||||||| |||||||||| |||  ||||||||||| |||||||||||||||||  ||||||   ||| |||||||| |||||   |||||||| |||||    
T  24802078 ttcagattcacaaataagaggaatactcatatttcttatactgttaggataccacttaagagc--ctaccatcaaagatttttatgataatactgttttc 24802175  T
Q  315 gnnnnnnntatgcatatttt-tcacttaccgggaataggcacaacatcctttccttgttggagtacc 380  Q
    |       | |||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||    
T  24802176 gaaaaat-tgtgcatattttgtcactcaccaggaataggcacaacatccttgccttgttggagtacc 24802241  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 24801978 - 24802025
Alignment:
Q  139 gagtgtacatagttctactcttgattgatcagtgcacaacgatagaag 186  Q
    ||||||||||||||||  |||| |||||||||| ||||||||||||||    
T  24801978 gagtgtacatagttcttttcttaattgatcagtacacaacgatagaag 24802025  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 47475874 - 47475921
Alignment:
Q  139 gagtgtacatagttctactcttgattgatcagtgcacaacgatagaag 186  Q
    ||||||||||||||||  |||| |||||||||| ||||||||||||||    
T  47475874 gagtgtacatagttcttttcttaattgatcagtacacaacgatagaag 47475921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 386
Target Start/End: Original strand, 47485573 - 47485629
Alignment:
Q  330 atttttcacttaccgggaataggcacaacatcctttccttgttggagtacccatgct 386  Q
    |||| ||||| ||| ||||||||||||||||| |  ||||||||||||| |||||||    
T  47485573 atttgtcactcaccaggaataggcacaacatcatggccttgttggagtatccatgct 47485629  T

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