View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_high_16 (Length: 393)
Name: NF11733_high_16
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 37 - 383
Target Start/End: Original strand, 55710949 - 55711296
Alignment:
| Q |
37 |
atacactccataaatcctatatgagctggcgaaagnnnnnnnnnaatcagctcaacatagactgatgtattgtttgacaaacagagttttaattccccaa |
136 |
Q |
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| T |
55710949 |
atacactccttaaatcctatatgagctggtgaaagtttttttttaatcagcacaacatagattgatgtattgtttaacaaacagagttttagtttcccaa |
55711048 |
T |
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| Q |
137 |
tttgaatgttatgttaatttaatttgatttgatatgtaacatttgatcatgtcccttttgtaacagagtgaaaaggagaagtttgtttgttaatgattta |
236 |
Q |
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| T |
55711049 |
tttgaatgttatgttaatttaatttgatttgatatgtaacatttgatcatgtcccttttgtaacaaagtcaaaaggagaagtttgtt----aatgattta |
55711144 |
T |
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| Q |
237 |
gatttag-----aagccttaagtgaatggtccagattattgatttagctgaaggaaataattgtagtagtttgttggaattttatggtctcaacatatta |
331 |
Q |
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| T |
55711145 |
gatttagattagaagccttaagcgaatggtctagattattgatttagctgaaggaaataattgtagtagtttgttggaattttatggtctcaacatatta |
55711244 |
T |
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| Q |
332 |
tgtaggaatggcatacatcactggagtaattaatgacaggctggagtctctg |
383 |
Q |
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| T |
55711245 |
tgtaggaatggcatacatcactggagtaattaatgacaggctggagtctctg |
55711296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 119 - 383
Target Start/End: Original strand, 55295115 - 55295374
Alignment:
| Q |
119 |
agagttttaattccccaatttgaatgttatgttaatttaatttgatttgatatgtaacatttgatcatgtcccttttgtaacagagtgaaaaggagaagt |
218 |
Q |
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| T |
55295115 |
agagttttaatttcctaatttcaatgctttttta-tgtaatttgattttatatgtatcatttgatcatgtcccttttgtaacaaagtgccaaagagaa-- |
55295211 |
T |
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| Q |
219 |
ttgtttgttaatgatttagatttagaagccttaagtgaatggtccagattattgatttagctgaaggaaataattgtagtagtttgttggaattttatgg |
318 |
Q |
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| T |
55295212 |
--gtttgttaatgctttagatttacaatccttaagtgaatggtctagtttattcatttagcataagta---aattgttttagtttgttggaattttatgg |
55295306 |
T |
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| Q |
319 |
tctc-aacata--ttatgtaggaatggcatacatcactggagtaattaatgacaggctggagtctctg |
383 |
Q |
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| T |
55295307 |
tttcaaacatatcttctgcaggaatggcatacagcacaggaggaactcatggcaggatggagtttctg |
55295374 |
T |
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