View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_high_24 (Length: 315)
Name: NF11733_high_24
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 35240961 - 35241223
Alignment:
| Q |
1 |
ccaaacagaaggattttgaaacccccttaaagacaccttccaacttttcgatccccggttatttatttattttttgtattctggccaaaaatgtaactaa |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||| || | ||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35240961 |
ccaaacagaaggattttcaaacccccttaaagacacctaccaaccttcc-atcccaa-ttatttatttatttttcgtattctggccaaaaatgtaactaa |
35241058 |
T |
|
| Q |
101 |
cacatgctagattcttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
35241059 |
cacatgctagattcttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcggaaaatcattaacccattttcagtttagatta |
35241158 |
T |
|
| Q |
201 |
agtaactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga |
265 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
35241159 |
agtaactccatagatgttagatgtccaggagaattacgaaggtgagagtaagaacaagatattga |
35241223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 265
Target Start/End: Complemental strand, 16050146 - 16049881
Alignment:
| Q |
3 |
aaacagaaggattttgaaacccccttaaagacaccttccaacttttcgatccccggttatttatttattttttgtattctggccaaaaatgtaactaaca |
102 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||| || | ||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
16050146 |
aaacagaaggattttcaaacccccttaaagacacctaccaacctt-ctatcccaagttatttatttatttttcgtattctggtcaaaaatgtaactaaca |
16050048 |
T |
|
| Q |
103 |
catgctagattcttctccagggaagcattaaattagaaacggaagagtgtaaatttaa----atcttgcagaaaatcattaacccattttcaatttagat |
198 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
16050047 |
catgctagattcttctctagggaagcattaaattagaagcggaagagtctaaatttaattaaatcttgcggaaaatcattaacccattttcaatttagat |
16049948 |
T |
|
| Q |
199 |
taagtaactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga |
265 |
Q |
| |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
16049947 |
taagtaactccatagatgttagatgtgcaggagaattacgaaggtgggagtaagaacaagagattga |
16049881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 30594217 - 30593963
Alignment:
| Q |
9 |
aaggattttgaaacccccttaaagacaccttccaacttttcgatccccggttatttatttattttttgtattctggccaaaaatgtaactaacacatgct |
108 |
Q |
| |
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||||||||| |||||||||||||||||||| ||||| || | |||| | ||||||||||||||||| ||||| |||| ||||||||||||||| |||||| |
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| T |
30594217 |
aaggattttcaaacccccttaaagacacctaccaaccttcc-atcctcagttatttatttatttttcgtattttggcaaaaaatgtaactaactcatgct |
30594119 |
T |
|
| Q |
109 |
agattcttctccagggaagcattaaattagaaacggaagagtgtaaatttaaatcttgcagaaaatcattaacccattttcaatttagattaagtaactc |
208 |
Q |
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| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| |
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| T |
30594118 |
atattcttctccatggaagcattaaattagaaatggaagagtgtaaatttaaatcttgcggaaagtcatt-acccattttcaatttagattaagtaactc |
30594020 |
T |
|
| Q |
209 |
catagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagattga |
265 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
30594019 |
catagatgttagatgtccaggagaattacgaaggtgggagtaagaacaagagattga |
30593963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 32966362 - 32966268
Alignment:
| Q |
169 |
gaaaatcattaacccattttcaatttagattaagtaactccatagatgttagatgtccagaagaattacgaaggtgggagtaagaacaagagatt |
263 |
Q |
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||||||||||||| || |||||||||||||||| |||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |
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| T |
32966362 |
gaaaatcattaacacaatttcaatttagattaaacaacttcatagatgttagatgtccaggagaattatgaaggtgggagcaagaacaagagatt |
32966268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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