View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_high_6 (Length: 614)
Name: NF11733_high_6
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 48255784 - 48255227
Alignment:
| Q |
18 |
agacttgtgattgatttcattggtaatcaacaatctacatcannnnnnnacattaatcaatgcttcccttaactcttccttactaactattgtaaaatgt |
117 |
Q |
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| T |
48255784 |
agacttgtgattgatttcattggtaatcaacaatctacatcatttttt-acattaatcaatgcttcccttaactcttccttactaactattgtaaaatgt |
48255686 |
T |
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| Q |
118 |
gcattatgtttgttgtgaacaagatttttcttttgaataattgttactatgttagtattttctcattcacacgggtttaaattgaaccacgatccgtata |
217 |
Q |
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| T |
48255685 |
gcattatgtttgttgtgaacaagatttttcttttgaataattgttactatgttagtattttctcatt---------------------acgatccgtata |
48255607 |
T |
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| Q |
218 |
gctggaaatatttgtatagttacggaatattcagtatcttatattatatcagtcataaatatgcatgacatgacatttttgtctccaccattaatttcaa |
317 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48255606 |
gctggaaatatttgtatagttatggaatattcagtatcttatatcat-----tcataaatatgcatgacatgacatttttgtctccaccattaatttcaa |
48255512 |
T |
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| Q |
318 |
cttactatttttatggtccaagaaaataaatattaactctatcaactgctgtctctgtatatcttggtatgtgatgtcattcaccatgattagagacata |
417 |
Q |
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| T |
48255511 |
cttactatttttatggtccaagaaaataaatattaactctatcaactgctatctctgtatatcttggtatgtgatgtcattcaccatgattagagacata |
48255412 |
T |
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| Q |
418 |
atttaatggttgagagctatatataatttattaaacaatcaaacatttttatttatttgattctggcagctcaagctattggaattccatttttgagtcc |
517 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48255411 |
atttaatggttgagagctatatatcatttattaaacaatcaaacatttatatttatttgattctggcagctcaagctattggaattccatttttgagtcc |
48255312 |
T |
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| Q |
518 |
atatctacaatcaataggatcttattataaacatggagccaactatgctacattggcatccactgtgcttctacctaatacttct |
602 |
Q |
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| T |
48255311 |
atatctacaatcaataggatcttattataaacatggagccaactatgctacattggcatccactgtgcttctacctaatacttct |
48255227 |
T |
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