View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_high_8 (Length: 570)
Name: NF11733_high_8
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 39907785 - 39908338
Alignment:
| Q |
1 |
gataaaacaccccctttcccctcaatgggatgtggccatcatatcctcagagtacctactttcgtggatccactaccactgtgagtatctttatcctctt |
100 |
Q |
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| T |
39907785 |
gataaaacactccatttcccctcaatgggatgtggccatcatatcctcggagtacctactttcgtggatccactaccactgtgagtatctttatcctctt |
39907884 |
T |
|
| Q |
101 |
tgggtaaatttttcgactagttatgaacataagtcttataaaagtacagtactcgtaaattttagaagagaatcttatattctagaactgtttaattttt |
200 |
Q |
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| T |
39907885 |
tgggtaaatttttcgactagttatgaacataagtcttataaaagtacagtactcgtaaatttttcaagagaatcttatattctagaactgtttaattttt |
39907984 |
T |
|
| Q |
201 |
ctaatcatacttagtcaacttggaccaatcctactttaaccaactgtcttaactaannnnnnnattcaacctttgattttgactagaccgtgctaacttg |
300 |
Q |
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| T |
39907985 |
ctaatcatacttggtcaacttggaccaatcctactttaaccaactgtcttaactaatttttttattcaacctttgattttgactagaccgtgctaacttg |
39908084 |
T |
|
| Q |
301 |
tttaagttcctactaatccaagacagttcgcaacattattgcaaacatgctgcgtaattgttgttatttgtttaacccccatctcattaccttggtgagt |
400 |
Q |
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| T |
39908085 |
tttaagttcctactaatccaagacagttcgcaacattattgcaaacatgctgcgtaattgttgttatttgtttaacccccatctcattaccttggtgagt |
39908184 |
T |
|
| Q |
401 |
tgcgttaatattattannnnnnnatcaaggtgagttgcactaattaataattcacgttaagccaattttttattttgcatttggatccaacatcgttaac |
500 |
Q |
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| T |
39908185 |
tgcgttaatattattatttttttatcaaggtgagttgcactaattaataattcacgttaagccaattttttattttgcatttggatccaacatcgttaac |
39908284 |
T |
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| Q |
501 |
cttgttcctctgaccttaatttctccatgtggtagccaagaagagacatatata |
554 |
Q |
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| T |
39908285 |
cttgttcctctgaccttaatttctccatgtggtagccaagaagagacatatata |
39908338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 4027959 - 4028013
Alignment:
| Q |
56 |
ctactttcgtggatccactaccactgtgagtatctttatcctctttgggtaaatt |
110 |
Q |
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| T |
4027959 |
ctacttccgtcgctccaccaccactgtaagtatctttatcctctttggataaatt |
4028013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 6119861 - 6119825
Alignment:
| Q |
75 |
accactgtgagtatctttatcctctttgggtaaattt |
111 |
Q |
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| T |
6119861 |
accactgtaagtatctttatcctctttggctaaattt |
6119825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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