View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11733_low_11 (Length: 474)
Name: NF11733_low_11
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Complemental strand, 53479288 - 53478840
Alignment:
| Q |
14 |
agaacgaattttttgggagaaaaatgaattgcaattaaatttagaataggttcatcaagt---cattcattagaattagagtagaataatggagagctcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479288 |
agaacgaattttttgggagaaaaatgaattgcaattaaatttagaataggttcatcaagttttcattcattagaattagagtagaataatggagagctcg |
53479189 |
T |
|
| Q |
111 |
catgtcatttctcagtctcctttacctttaatttctcacacactttttcttttagtcatacatacaacagcaacaaatatagaaagccacctaattgaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479188 |
catgtcatttctcagtctcctttacctttaatttctcacacactttttcttttagtcatacatacaacagcaacaaatatagaaagccacctaattgaat |
53479089 |
T |
|
| Q |
211 |
ctgaagggaatttcaatcgcttatctagattaggatatgtatgtaaccacctaatctaacactgtagcacattcaagacacacacgattataattggtgt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479088 |
gtgaagggaatttcaatcgcttatctagattaggatatgtatgtaaccacctaatctaacactgtagcacattcaagacacacacgattataattggtgt |
53478989 |
T |
|
| Q |
311 |
gtatagaaggaacttgattctttaaatcagcttcatatacatagaagcatgcagccagggacttttaatttgtcacgatccatgcacagttgtgacacac |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53478988 |
gtatagaaggaacttgattctttaaatcagcttcatatacatagaagcatgcagccagggacttttaatttgtcacgatccatgcacagttgtgacacac |
53478889 |
T |
|
| Q |
411 |
tttggatgcacttcatagccacattgaagacattgataggcccaattag |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53478888 |
tttggatgcacttcatagccacattgaagacattgataggcccaattag |
53478840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University