View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_low_13 (Length: 448)

Name: NF11733_low_13
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_low_13
NF11733_low_13
[»] chr1 (3 HSPs)
chr1 (144-428)||(35246686-35246977)
chr1 (1-139)||(47805200-47805338)
chr1 (1-133)||(47800618-47800750)
[»] chr2 (2 HSPs)
chr2 (1-137)||(21260047-21260183)
chr2 (1-137)||(21264628-21264764)
[»] chr3 (2 HSPs)
chr3 (1-139)||(6847771-6847909)
chr3 (1-133)||(6843168-6843300)
[»] chr7 (1 HSPs)
chr7 (166-242)||(38632768-38632844)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 144 - 428
Target Start/End: Original strand, 35246686 - 35246977
Alignment:
Q  144 acatacatactcagctagagagttgatagtaatcagtaatggcttgattcaaccaattagaacaaatactat-ggggcttatagtcattctgttctcctc 242  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  35246686 acatacatactcagcttgagagttgatagtaatcagtaattgcttgattcaaccaattagaacaagtactatgggggcttataatcattctgttctcctc 35246785  T
Q  243 aaatagcctcgagtttggtgaaatattggctgctattatgaacttgnnnnnnnntccgaaagccgtttatggagaacaatgagtgagttgtgttcttcta 342  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||        ||  |  ||||||||| ||||||| |||||||||||||||||||||    
T  35246786 aaatagcctcgagtttggtgaaaatttggctgctagtatgaacttgaaaaaacatcatatggccgtttatagagaacagtgagtgagttgtgttcttcta 35246885  T
Q  343 tggacgaatgtgaatgattcaaggaaatggaacgaccaattcg------aaggagagtgaacaatgttgaaagaaacaagggagagaaactg 428  Q
     ||||||| ||||||||||||||||||||||||||||||||||      ||||| |||||| ||||||||||||||||||||||||||||||    
T  35246886 cggacgaacgtgaatgattcaaggaaatggaacgaccaattcgaagggaaaggaaagtgaaaaatgttgaaagaaacaagggagagaaactg 35246977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 47805200 - 47805338
Alignment:
Q  1 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  47805200 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttgg 47805299  T
Q  101 aaagaaataaaatgagacctactctatcagtttgacaaa 139  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  47805300 aaagaaataaaatgagacctactgtatcagtttaacaaa 47805338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 47800618 - 47800750
Alignment:
Q  1 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttgg 100  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  47800618 tttgtaatcaaaaataatttaccattatttcaatctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttgg 47800717  T
Q  101 aaagaaataaaatgagacctactctatcagttt 133  Q
    ||||||||||||||||||||||| |||||||||    
T  47800718 aaagaaataaaatgagacctactgtatcagttt 47800750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 21260047 - 21260183
Alignment:
Q  1 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  21260047 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttgg 21260146  T
Q  101 aaagaaataaaatgagacctactctatcagtttgaca 137  Q
    ||||||||||||||||||||||| |||||||||||||    
T  21260147 aaagaaataaaatgagacctactgtatcagtttgaca 21260183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 21264628 - 21264764
Alignment:
Q  1 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  21264628 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttgg 21264727  T
Q  101 aaagaaataaaatgagacctactctatcagtttgaca 137  Q
    ||||||||||||||||||||||| |||||||||||||    
T  21264728 aaagaaataaaatgagacctactgtatcagtttgaca 21264764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 6847771 - 6847909
Alignment:
Q  1 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  6847771 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggttttttacttgtatatatagaatacctttacactcttgtaatgtagatttgg 6847870  T
Q  101 aaagaaataaaatgagacctactctatcagtttgacaaa 139  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  6847871 aaagaaataaaatgagacctactgtatcagtttaacaaa 6847909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 6843168 - 6843300
Alignment:
Q  1 tttgtaatcagaaataatttaccattatttcagtctagtaaaaataggtttttcacttgtatatatagaatacctttacactcttgtaataaagatttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  6843168 tttgtaatcagaaataatttaccattatttcagtctagtaaaaatagattttttacttgtatatatagaatacctttacactcttgtaatgtagatttgg 6843267  T
Q  101 aaagaaataaaatgagacctactctatcagttt 133  Q
    ||||||||||||||||||||||| |||||||||    
T  6843268 aaagaaataaaatgagacctactgtatcagttt 6843300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 242
Target Start/End: Original strand, 38632768 - 38632844
Alignment:
Q  166 ttgatagtaatcagtaatggcttgattcaaccaattagaacaaatactatggggcttatagtcattctgttctcctc 242  Q
    |||| ||||||||||||||||||||||| |||||  ||||||| ||| |  ||  || |||||||||||||||||||    
T  38632768 ttgagagtaatcagtaatggcttgattcgaccaacaagaacaagtaccacaggttttttagtcattctgttctcctc 38632844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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