View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_15 (Length: 426)
Name: NF11733_low_15
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 412
Target Start/End: Original strand, 24566500 - 24566906
Alignment:
| Q |
7 |
tggacatcaatggcaccccccttacccctggtggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttgg |
106 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |
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| T |
24566500 |
tggacataaatggcaccccccttacccctggtggccaatactacattttaccagaaagtgataaccctagtattggaggactaatcctaaacaaaattga |
24566599 |
T |
|
| Q |
107 |
tgattcaaattgtccagtaactgtcatacaagatattactgtaataggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttatca |
206 |
Q |
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||||| | | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24566600 |
tgatttagagtgtccagtaaccgtcgtacaagatattactgtaataggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttgcca |
24566699 |
T |
|
| Q |
207 |
ggtactgatcttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatgacactcaactaagttttgttg |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
24566700 |
ggtactgatcttgagattgagttcactacgaagcctgattgcgctaaatcgtcgaaatggtcgatgtttgttgatcatgacactcaactaagttttgtcg |
24566799 |
T |
|
| Q |
307 |
gtattggtggtcctgcgaataatcctggaatagaatcaaccagtgg-aaannnnnnnnagtgaaacatgtacatggatctggtaatgcttataggattgt |
405 |
Q |
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||||||||||| ||||||| |||||||| ||||| |||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||| |
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| T |
24566800 |
gtattggtggttctgcgaacaatcctggtgtagaaacaaccagtggaaaatttttagtagtgaaacatcaacatggatctggtcatgcttataggattgg |
24566899 |
T |
|
| Q |
406 |
attttgt |
412 |
Q |
| |
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||||||| |
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| T |
24566900 |
attttgt |
24566906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 27 - 355
Target Start/End: Original strand, 24554817 - 24555145
Alignment:
| Q |
27 |
cttacccctggtggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaattgtccagtaa |
126 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||||||||||| ||||||||||||||||| |||||| ||| |
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| T |
24554817 |
cttacccctggtaaccaatactacattttaccagcaagtgataaccctagcagtggaggactaaccctagacaaagttggtgattcagtgtgtccactaa |
24554916 |
T |
|
| Q |
127 |
ctgtcatacaagatattactgtaataggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttatcaggtactgatcttgagattga |
226 |
Q |
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||||| ||||| ||| | |||||| ||||||||||||||||||| ||| ||||||| ||||||||||| ||| | | ||||| ||||||||||| || |
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| T |
24554917 |
ctgtcctacaaaataatgctgtaactggtttaccagttaaattcaccatactagaaaacagcactagtaacatcgttaccggtaccgatcttgagatcga |
24555016 |
T |
|
| Q |
227 |
gttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatgacactcaactaagttttgttggtattggtggtcctgcgaat |
326 |
Q |
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| T |
24555017 |
gttcattaacaagccagattgtgctgaatcttccaaatggttgatggttgttgatcatgtcactcaactaagttttgttggtattggtggtcctgcaaac |
24555116 |
T |
|
| Q |
327 |
aatcctggaatagaatcaaccagtggaaa |
355 |
Q |
| |
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||||||| |||||| || |||||||| |
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| T |
24555117 |
tatcctggtgtagaattaattagtggaaa |
24555145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 2930415 - 2930716
Alignment:
| Q |
16 |
atggcaccccccttacccctggtggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaa |
115 |
Q |
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|||| |||||||||| ||||||| |||||||||||||||| |||| ||||||||||||| | |||||||||||||||||||||||||||| ||| | | |
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| T |
2930415 |
atggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggactaaccctaaacaaagttggtaatttaga |
2930514 |
T |
|
| Q |
116 |
ttgtccagtaactgtcatacaagatattactgtaataggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttatcaggtactgat |
215 |
Q |
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| T |
2930515 |
gtgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccatcccagaaaacagcactggtaatatcttgaccggtaccgat |
2930614 |
T |
|
| Q |
216 |
cttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatgacactcaactaagttttgttggtattggtg |
315 |
Q |
| |
|
|||||||| |||||||||| || ||||||| |||||| | || ||||||| ||| |||||||||||| | ||||||||||||| |||||||||||||| |
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| T |
2930615 |
cttgagatcgagttcactaaaaaggctgattgtgctgaagcatcaaaatggttgatgtttgttgatcataatactcaactaagttgtgttggtattggtg |
2930714 |
T |
|
| Q |
316 |
gt |
317 |
Q |
| |
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|| |
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| T |
2930715 |
gt |
2930716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 2916827 - 2917128
Alignment:
| Q |
16 |
atggcaccccccttacccctggtggccaatactacattttaccagaaagtgaaaaccctagtattggaggactaaccctaaacaaagttggtgattcaaa |
115 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||||||||| |||| ||||||||||||| | ||||||||||||| |||||||||||||||||| | | |
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|
| T |
2916827 |
atggtaccccccttatccctggtagccaatactacatttttccagctagtgaaaaccctaacagtggaggactaaccttaaacaaagttggtgatttaga |
2916926 |
T |
|
| Q |
116 |
ttgtccagtaactgtcatacaagatattactgtaataggtttaccagttaaattcagcatgttagaaaatagcactagtaatatcttatcaggtactgat |
215 |
Q |
| |
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||||||||||||||| ||||| ||| | || | |||||||||||||||||||||| | | |||||| | ||| |||||||||| | ||||| ||| |
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| T |
2916927 |
atgtccagtaactgtcctacaaaataatgctatgataggtttaccagttaaattcaccgtcccagaaaacaacaccggtaatatcttgactggtaccgat |
2917026 |
T |
|
| Q |
216 |
cttgagattgagttcactacgaaacctgattgcgctgaatcgtcgaaatggtcgatatttgttgatcatgacactcaactaagttttgttggtattggtg |
315 |
Q |
| |
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|||||||||||||| |||| ||| |||||||| |||||||| || ||||||| ||| ||| |||||||| | ||||||||||||| |||||||||||||| |
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| T |
2917027 |
cttgagattgagtttactaagaagcctgattgtgctgaatcatcaaaatggttgatgtttcttgatcataatactcaactaagttgtgttggtattggtg |
2917126 |
T |
|
| Q |
316 |
gt |
317 |
Q |
| |
|
|| |
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|
| T |
2917127 |
gt |
2917128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 412
Target Start/End: Original strand, 24555161 - 24555197
Alignment:
| Q |
376 |
acatggatctggtaatgcttataggattgtattttgt |
412 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
24555161 |
acatggatctggtaatgcttatagggttggattttgt |
24555197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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