View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_16 (Length: 407)
Name: NF11733_low_16
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 21 - 397
Target Start/End: Complemental strand, 46796501 - 46796124
Alignment:
| Q |
21 |
tacccacacaccatccctaaccaaacataaaagaaacctgactggtaccccaatattccagataaacttacaataggatacagtgtatctattcaaaatt |
120 |
Q |
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| T |
46796501 |
tacccacacaccatccctaaccaaacataaaagaaacctgactggtaccccaatattccagataaacttacaataggatacagtgtatctattcaaaatt |
46796402 |
T |
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| Q |
121 |
tattattaaactattaaggctaatgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtccatagcagca |
220 |
Q |
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| T |
46796401 |
tattattaa-ctattaaggctaatgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtccatagcatca |
46796303 |
T |
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| Q |
221 |
ttcataatttcagagagatgtgccagaagaagaacctttgttggctcttttctacaagg--nnnnnnnnntcagttcttagcatgaccttaaaatcaata |
318 |
Q |
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| T |
46796302 |
ttcataatttcagagagatgtgccagaagaagaacctttgttggctcttttctacaaggaaaaaaaaaaatcagttcttagcatgaccttgaaatcaata |
46796203 |
T |
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| Q |
319 |
ttcaactgccttatnnnnnnntgatgtgcaacactgcataaaccatcatccactcaacctacctgttctgccacctttg |
397 |
Q |
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| T |
46796202 |
ttcaactgccttataaaaaaatgatgtgcaacactgcataaaccatcatccactcaacctacctgttctgccacttttg |
46796124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 47390777 - 47390860
Alignment:
| Q |
143 |
atgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtccatagcagcattcata |
226 |
Q |
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| T |
47390777 |
atgtccatagttgaataggttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattcata |
47390860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 223
Target Start/End: Original strand, 47421596 - 47421676
Alignment:
| Q |
143 |
atgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtccatagcagcattc |
223 |
Q |
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| T |
47421596 |
atgtccatagttgaatagcttggctcactcttcacttggatagctgaagaagcattatgagaatggtctgcagcagcattc |
47421676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 47419137 - 47419204
Alignment:
| Q |
143 |
atgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtc |
210 |
Q |
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| T |
47419137 |
atgtccatagttgaataggttggctcactctttacttggatagctgaagaagcattatgagaatggtc |
47419204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 226
Target Start/End: Original strand, 47407888 - 47407974
Alignment:
| Q |
140 |
ctaatgtccataattgaataggtcggctcactcttcacttgaagagctgaagaagtaatatgagaatggtccatagcagcattcata |
226 |
Q |
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| T |
47407888 |
ctaatgtccatagttgaataagtcggcccagtcttcacttggattactgaagaattattatgagaatggtccgcagcagcattcata |
47407974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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