View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_19 (Length: 378)
Name: NF11733_low_19
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 196 - 363
Target Start/End: Original strand, 42665965 - 42666132
Alignment:
| Q |
196 |
ttagtcttggaatattcctcctcctccctctgcgtagttgaaattttttgtacggaaaaacgtcacgcaagaaaagaattatagattgatctggaagcca |
295 |
Q |
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| T |
42665965 |
ttagtcttggaatattcctcctcctccctctgcgtagttgaaattttttgtacggaaaaacgtcacgcaagaaaagaattaaagattgatctggcagcca |
42666064 |
T |
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| Q |
296 |
aacaaagtacaacagcagaagtacttttttcccacattttacatcttataaatttcttgtacaaaagt |
363 |
Q |
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| T |
42666065 |
aacaaagtacaacagcagaagtacttttttcccacattttacatcttataaatttcttgtacaaaagt |
42666132 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 10617195 - 10617232
Alignment:
| Q |
15 |
cataggggcattgtagtactttctaaaacagataatac |
52 |
Q |
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| T |
10617195 |
cataggggcattgtagtactttccaaaacagataatac |
10617232 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 34411501 - 34411464
Alignment:
| Q |
15 |
cataggggcattgtagtactttctaaaacagataatac |
52 |
Q |
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| T |
34411501 |
cataggggcattgtagtacttttcaaaacagataatac |
34411464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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