View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_2 (Length: 868)
Name: NF11733_low_2
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 18 - 860
Target Start/End: Complemental strand, 43868213 - 43867371
Alignment:
| Q |
18 |
acagcaactgctcctcatcagcctcgtcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagt |
117 |
Q |
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| T |
43868213 |
acagcaactgctcctcatcagcctcatcaatatcaacaagtagttcttgtccttgttcttcttcacctccgagttcaggaacaagtggaagaaaactagt |
43868114 |
T |
|
| Q |
118 |
attgaagagaactttttccttgagacgttgttgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgc |
217 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868113 |
attgaagagaactttttccttgagacgttgctgttgttgttgaatcgacgaatttttgttgtggcggggagttcttgctttccttgtgaatccactgtgc |
43868014 |
T |
|
| Q |
218 |
catgcttgtgctgttgttgttaccttagcagatgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcac |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43868013 |
catgcttgtgctgttgttgttaccttagcagacgcggtttgaaggcgaaccctttcgtgtctacttgctaatagatttgcagagtgaaccaaattgtcac |
43867914 |
T |
|
| Q |
318 |
aaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867913 |
aaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctcttcttcttaaacagctatcacatgctcttgctgtcttggctcccaaggcacc |
43867814 |
T |
|
| Q |
418 |
tgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtcnnnnnnnnnnnnntgattcaattaatggtttgtgtt |
517 |
Q |
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| T |
43867813 |
tgcatctgcatcacctttcatgtctataatcatagaatataactaaactatattgttttatgtc------aaaaaaatgattcaattaatggtttgtgtt |
43867720 |
T |
|
| Q |
518 |
tgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtac------nnnnnnnncttctctctgcccatgcacttttggtaatttgcta |
611 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
43867719 |
tgttgaaactagacaatgtgatgaaggagacacactagtgtcagtaggtactttttttttttttttttctctctgcccatgcacttttggtaatttgcta |
43867620 |
T |
|
| Q |
612 |
caggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagttaatcttattctctgaattctaatt |
711 |
Q |
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| T |
43867619 |
caggaatattaatggaggttaatgggacccaccaattggtatgatcttagtgttgattggctagagagttgaagttaatcttattctctgaattctaatt |
43867520 |
T |
|
| Q |
712 |
ggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttgttgtgttacatgtataataattc |
811 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867519 |
ggttgtctttttaattataggatttcttatggacccattagggtttgtgcattaaatttttgagtaagacatatttgttgtgttacatgtataataattc |
43867420 |
T |
|
| Q |
812 |
aataatgtctgctatttgaggtcccctctccttaggttgctttcatctc |
860 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43867419 |
aataatgtctgctatttgaggtcccctctccttaggttgctttcatctc |
43867371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 50056084 - 50056137
Alignment:
| Q |
313 |
gtcacaaccatgacaaaggaaagcatcatctgcagcacaaaaccaacgtgctct |
366 |
Q |
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||||||| | ||||| || ||||||||||| ||||||||| ||||||||||||| |
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| T |
50056084 |
gtcacaagcttgacagagaaaagcatcatcagcagcacaataccaacgtgctct |
50056137 |
T |
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