View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_22 (Length: 347)
Name: NF11733_low_22
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_22 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 123 - 347
Target Start/End: Complemental strand, 55711535 - 55711310
Alignment:
| Q |
123 |
tttaattacgcggtggcctagcttgaaccaatcaccagcaagtatggtaaagtctcctgcggagggaggaaaggggacaggaatgtgaatgtgagcacgg |
222 |
Q |
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| T |
55711535 |
tttaattacacggtggcctagcttgaaccaatcaccagcaagtatggtaaagtctcctgcggagggaggaaaggggacaggaatctgaatgtgagcacgg |
55711436 |
T |
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| Q |
223 |
ctccaaattctgaagctaccaaatgcaacagcggctttattcattcaaactg-cgggaagtagaaatagctaccaatctgatctttcacctgaagagtat |
321 |
Q |
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| T |
55711435 |
ctccaaattctgaagctaccaaatgcaacagcggctttattcattcaaaatgacgggaagtagaaatagctaccaatctgatctttcacctgaagagtat |
55711336 |
T |
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| Q |
322 |
aagtgaagttcttcctgggcgtgatc |
347 |
Q |
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| T |
55711335 |
aagtgaagttcttcctgggcgtgatc |
55711310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 336
Target Start/End: Complemental strand, 55295603 - 55295399
Alignment:
| Q |
127 |
attacgcggtggcctagcttgaaccaatcaccagcaagtatggtaaagtctcctgcggagggaggaaaggggacaggaatgtgaatgtgagcacggctcc |
226 |
Q |
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| T |
55295603 |
attacgcggtggcctagcttggaccaatcaccagcaagtaaggtaaagtccccagcaggaggaggaaaaggaacaggaatgcga------ggacggctcc |
55295510 |
T |
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| Q |
227 |
aaattctgaagctaccaaatgcaacagcggctttattcattcaaactgc-gggaagtagaaatagctaccaatctgatctttcacctgaagagtataagt |
325 |
Q |
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| T |
55295509 |
aaattctgatgccaccaaatgcaccagcagctttatgcattccaagtgatgggaagtagaagtaggtaccgatctggtccttcacctggagagtgtaagt |
55295410 |
T |
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| Q |
326 |
gaagttcttcc |
336 |
Q |
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| T |
55295409 |
gaagttcttcc |
55295399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55711657 - 55711601
Alignment:
| Q |
1 |
ccattctcgaggactcgtctcagtctctaaaacatcagagggtaagtaataagtatt |
57 |
Q |
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| T |
55711657 |
ccattctcgaggactcgtctcagtctctaaaacatcagagggtaagtaataagtatt |
55711601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55295724 - 55295668
Alignment:
| Q |
1 |
ccattctcgaggactcgtctcagtctctaaaacatcagagggtaagtaataagtatt |
57 |
Q |
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| T |
55295724 |
ccattctccaggactcgtctcaatctctaaaacatcagagggtacgtaataagtatt |
55295668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 17346394 - 17346340
Alignment:
| Q |
279 |
aagtagaaatagctaccaatctgatctttcacctgaagagtataagtgaagttct |
333 |
Q |
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| T |
17346394 |
aagtagaaatagctaccaatctgatcttttacttgaagaatataagtgaagttct |
17346340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 326
Target Start/End: Original strand, 17137400 - 17137447
Alignment:
| Q |
279 |
aagtagaaatagctaccaatctgatctttcacctgaagagtataagtg |
326 |
Q |
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| T |
17137400 |
aagtagaaatagctgccaatctgatcttttacttgaagaatataagtg |
17137447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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