View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_low_28 (Length: 304)

Name: NF11733_low_28
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_low_28
NF11733_low_28
[»] chr4 (2 HSPs)
chr4 (1-288)||(24224612-24224899)
chr4 (167-260)||(11096893-11096986)
[»] chr7 (1 HSPs)
chr7 (76-186)||(17927761-17927870)
[»] chr6 (4 HSPs)
chr6 (77-187)||(10740746-10740855)
chr6 (59-136)||(13166651-13166727)
chr6 (73-189)||(9401768-9401883)
chr6 (154-197)||(3950609-3950652)
[»] chr2 (1 HSPs)
chr2 (186-253)||(42631524-42631591)
[»] chr3 (1 HSPs)
chr3 (218-262)||(814352-814396)
[»] chr5 (1 HSPs)
chr5 (179-245)||(17749814-17749880)
[»] chr8 (1 HSPs)
chr8 (113-214)||(24725780-24725881)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 24224899 - 24224612
Alignment:
Q  1 ccaagcaattgacggaaggaaccatgctttttcttcaatcataaannnnnnnnccgaacaaatgaccaacattaaaaattaaaccaaatcaatcacacaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||||||    
T  24224899 ccaagcaattgacggaaggaaccatgctttttcttcaatcataaattttttttccgaataaatgaccaacattaaaaattaaaccaaatcaatcacacaa 24224800  T
Q  101 cattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggataccatgttaacaatatagataataag 200  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24224799 cattccttaaacttttgggaactcaatagcgaaagcgataaacaattcaatgaggattagatcatgctttgaataccatgttaacaatatagataataag 24224700  T
Q  201 ataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaataacttaacactgagttatctattagctaagctact 288  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  24224699 ataaaataacaaagtgactaacaaatacagttagcgtttcatagaataccaataactcaacactcagttatctattagctaagctact 24224612  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 11096986 - 11096893
Alignment:
Q  167 ctttggataccatgttaacaatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaataacttaa 260  Q
    |||| |||| |||||||||||||||| ||||  || | |||||||||| |||||| ||| |||||||||||||||||||||||| ||| |||||    
T  11096986 ctttagatatcatgttaacaatatagctaatcggagagaataacaaagagactaaaaaagacagttagagtttcatagaatacctataccttaa 11096893  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 186
Target Start/End: Original strand, 17927761 - 17927870
Alignment:
Q  76 aaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggata 175  Q
    |||||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||| | |||||||| || || ||| ||| |||||| || |||    
T  17927761 aaattaaaccaaatcaatcacacaacattccc-aaacttttgaaaactcaatagcggaagctacaaacaatttaaagacgatcaaaccatgctctgtata 17927859  T
Q  176 ccatgttaaca 186  Q
    |||||||||||    
T  17927860 ccatgttaaca 17927870  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 10740855 - 10740746
Alignment:
Q  77 aattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggatac 176  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||| | | |  |||||| |||||| ||| |||||| | |||||    
T  10740855 aattaaaccaaatcaatcacacaacattcc-caaacttttgggaactcaactgcggaagcgacagatcattcaaggaggatcaaaccatgctcttgatac 10740757  T
Q  177 catgttaacaa 187  Q
    |||||||||||    
T  10740756 catgttaacaa 10740746  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 13166727 - 13166651
Alignment:
Q  59 caaatgaccaacattaaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagc 136  Q
    |||| |||||||| || ||||||||||||||||||||||||| |||||  ||| |||||||||| ||| |||||||||    
T  13166727 caaaagaccaacactataaattaaaccaaatcaatcacacaaaattcc-caaatttttgggaacacaaaagcggaagc 13166651  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 9401883 - 9401768
Alignment:
Q  73 taaaaattaaaccaaatcaatcacacaacattccttaaacttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttgg 172  Q
    ||||||| |||||||||||||||||||| |||||  ||| |||||||||||||| | ||||||  | ||| | ||||| |||||| | | || | | | |    
T  9401883 taaaaatcaaaccaaatcaatcacacaatattcc-caaatttttgggaactcaacaacggaagagacaaatagttcaaggaggatcagaacaagttctcg 9401785  T
Q  173 ataccatgttaacaata 189  Q
    |||||||||||||||||    
T  9401784 ataccatgttaacaata 9401768  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 3950652 - 3950609
Alignment:
Q  154 ggattaaatcatgctttggataccatgttaacaatatagataat 197  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||    
T  3950652 ggatcaaaccatgctttcgataccatgttaacaatatagataat 3950609  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 42631524 - 42631591
Alignment:
Q  186 aatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcatagaataccaat 253  Q
    |||||||||||| ||||| |||||||||| |||||||||| || ||||||||||||||||||| ||||    
T  42631524 aatatagataatcagatagaataacaaagagactaacaaaaactgttagagtttcatagaatatcaat 42631591  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 814352 - 814396
Alignment:
Q  218 ctaacaaatacagttagagtttcatagaataccaataacttaaca 262  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||    
T  814352 ctaacaaagacagctagagtttcatagaataccaatagcttaaca 814396  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 245
Target Start/End: Complemental strand, 17749880 - 17749814
Alignment:
Q  179 tgttaacaatatagataataagataaaataacaaagtgactaacaaatacagttagagtttcataga 245  Q
    ||||||||||||||||||| ||| | ||||| |||| |||||||||| || ||||  ||||||||||    
T  17749880 tgttaacaatatagataatcagagagaataataaagagactaacaaaaacggttaaggtttcataga 17749814  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 24725881 - 24725780
Alignment:
Q  113 ttttgggaactcaatagcggaagcaataaacaattcaatgaggattaaatcatgctttggataccatgttaacaatatagataataagataaaataacaa 212  Q
    ||||||||| ||||||| |||||  |||||  |||||| || ||| |||| | ||| | |||| ||||||||||| ||||||||| ||||| ||||| ||    
T  24725881 ttttgggaattcaatagaggaagttataaatgattcaaggacgatcaaattaggctcttgatatcatgttaacaacatagataatcagatagaataataa 24725782  T
Q  213 ag 214  Q
    ||    
T  24725781 ag 24725780  T

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