View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_low_29 (Length: 293)

Name: NF11733_low_29
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_low_29
NF11733_low_29
[»] chr1 (1 HSPs)
chr1 (1-291)||(42621838-42622124)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 42622124 - 42621838
Alignment:
Q  1 gttttcaatatgtcacagcaacttgaaataggtccatatagatcattgagttagcagaggtcagtttctgtagtggacaacagttataaatggcaaaaat 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  42622124 gttttcaatatgtcacagcaacttgaaacaggtccatatagatcattgagttagcagagttcagtttctttagtggacaacagttataaatggcaaaaat 42622025  T
Q  101 tgttgccaagttttggtatcatgctaatgatgagtacaagacacagacacttcaaattaccccaacctacgtacttccaacgtttcgcccaacatagcct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||    
T  42622024 tgttgccaagttttggtatcatgctaatgatgagtacaagacacagacacttcaaattaccccaacc----tacttccaacgtttcgcccaacatagcct 42621929  T
Q  201 actgattgactttttatcgagtatatcaatggcaatacctcactttatcacgtggaccattcccaattttaatattcatcaaacccctttg 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42621928 actgattgactttttatcgagtatatcaatggcaatacctcactttatcacgtggaccattcccaattttgatattcatcaaacccctttg 42621838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University