View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_3 (Length: 857)
Name: NF11733_low_3
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 177 - 831
Target Start/End: Complemental strand, 25840037 - 25839382
Alignment:
| Q |
177 |
taagatgaaccacacgaagaagcaactcagtgtctaatagtaacacctcttaaacaaacacatgacaacacgacttaagtgcctcctcttgatcaaaact |
276 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25840037 |
taaggtgaaccacacgaagaagcaactcagtgtctaatagtaacacctcttaaacaaacacatgacagcacgacttaagtgcctcctcttgatcaaaact |
25839938 |
T |
|
| Q |
277 |
atcacaattcaaacatgcaccaaaatttttaccacgaattttatttatgtgtaacatagtgatcaataaactcaatttgaatccaaatcaacaacaaaca |
376 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25839937 |
atcagaattcaaacatgcaccaaaatttttaccacgaattttatttatgtgtaacatagtgatcaataaactcaatttgaatccaaatcaacaacaaaca |
25839838 |
T |
|
| Q |
377 |
tatgtttcaaccttttaccaatattatagtatagtctcgaggatagaaaaatattattcaactggaagacttcaataaagatggtccaaataaattcttt |
476 |
Q |
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| T |
25839837 |
tatgtttcaaccttttaccaatattatagtatagtctcgaggatagaaaaatattattcaaatggaagacttcaataaagatggtccaaataaattcttt |
25839738 |
T |
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| Q |
477 |
gatgagattaatacagaagtacaaaacgaatagacacttgatagtaataacatgtttgcaaaaagaaaatgtataaatttaaagaaaattaactataatt |
576 |
Q |
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| T |
25839737 |
gatgagattaatacagaagtacaaaacgaatagacacttgatagtaataacatgtttgcaaaaagaaaatgtataaatttaaagaaaattaactataatt |
25839638 |
T |
|
| Q |
577 |
acatcaaagataagaaccattttcatcaatttggtacattaattctcaatcaaatcatttccaaatgtatttttgttaaccatggtgttatcgaaagaaa |
676 |
Q |
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| T |
25839637 |
acatcaaagataagaaccattttcatcaatttggtacattaattctcaatcaaatcatttccaaatgtatttttgttaaccatggggttatcgaaagaaa |
25839538 |
T |
|
| Q |
677 |
gatctctaataattcggaattcaacctagatataagtaaaatctgattaaaaattgctccatccataaaccgaactcatattctcattaacatggnnnnn |
776 |
Q |
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| T |
25839537 |
gatctctaataattcggaattcaacctagatataagtaaaatctgattaaaaattgctccatccataaaccgaactcatattctcattaacatggttttt |
25839438 |
T |
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| Q |
777 |
nnnc-ttctcacaaaggatttttagttctccgtatttgtatagagtataaatataa |
831 |
Q |
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| T |
25839437 |
tttctttctcacaaaggatttttagttctccgtatttatataaagtataaatataa |
25839382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 25840191 - 25840102
Alignment:
| Q |
22 |
gaacgaattgtcacaaacttctaaaaagatctcaagggatttggctgagttaaacaaagcttcccaacaatatctcaaaatggcctgcgc |
111 |
Q |
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| T |
25840191 |
gaacgaattgtcacaaacttctaaaaagatctcaagggatttggctgagttagacaaagcttcccaacaatatctcaaaatagcctgcgc |
25840102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 1982428 - 1982357
Alignment:
| Q |
19 |
cacgaacgaattgtcacaaacttctaaaaagatctcaagggatttggctgagttaaacaaagcttcccaaca |
90 |
Q |
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| T |
1982428 |
cacgaatgaattgttacaaacttctaaaaaaatcttaagagatttaactgagttaaacaaaggttcccaaca |
1982357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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