View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_35 (Length: 251)
Name: NF11733_low_35
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 2598270 - 2598473
Alignment:
| Q |
11 |
caaaggtccaaatgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatttaaaatagcatgcttac |
110 |
Q |
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| T |
2598270 |
caaaggtccagatgggctaggtcatgtagtaaaggatgtatcaagaaatatgaaatatcttcaatccaaacatcttccccatttaaaatagcatgcttac |
2598369 |
T |
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| Q |
111 |
ctaaaaaatgcgctaatttgttgctgtttctactttctacgggaatgcctatactgatctacttttaatatttacgtttgcacaaaacctgttcagctgc |
210 |
Q |
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| T |
2598370 |
ctaaaaaatgcgctaatttgttgctgtttctactttctacggcaatgcctatactgatctacttttaatatttacgtttgcacaaaacctgttcagctgc |
2598469 |
T |
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| Q |
211 |
aaag |
214 |
Q |
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|||| |
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| T |
2598470 |
aaag |
2598473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 93
Target Start/End: Original strand, 2582964 - 2583046
Alignment:
| Q |
11 |
caaaggtccaaatgggctaggtcatgtactaaaggatatatcaagaaatatggaatatcttcaatccaaacaccttccccatt |
93 |
Q |
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| T |
2582964 |
caaaggtccaaatgggctaggtcatgtaccaaaggatgtataaagaaatatggaatatcttcaatccaaacaccttccccatt |
2583046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 2583772 - 2583836
Alignment:
| Q |
78 |
aaacaccttccccatttaaaatagcatgcttacctaaaaaatgcgctaatttgttgctgtttcta |
142 |
Q |
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| T |
2583772 |
aaacaccttccccatttaaaatagcatacttagctaaaaaatgggctaattggttgttgtttcta |
2583836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 2598489 - 2598528
Alignment:
| Q |
212 |
aagccaatgcttccgcgtcaaaaggttcttcattactttc |
251 |
Q |
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| T |
2598489 |
aagccaatgcttccgcgtcaaaaggttcttcattactttc |
2598528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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