View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_36 (Length: 241)
Name: NF11733_low_36
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 16050352 - 16050132
Alignment:
| Q |
18 |
agcaactgcattttgttgctcttctcactgtaatttaatggagaacaattaacccttaaagctttaagtgcctctggaaaattaattggaacaatgattg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| | ||||||||||||||||||||| |
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| T |
16050352 |
agcaactgcattttgttgctcttctcactgtaatttaatggagaacaatagacccttatagctttaagtgcctctg-ataattaattggaacaatgattg |
16050254 |
T |
|
| Q |
118 |
aagattaaaaatcgaatataatagtatgaatatacgagtacaatctcaattttttgcaaaaactcaaaagagaaaaatgaagaaggagcatccattgttt |
217 |
Q |
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||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16050253 |
aagattaaaaatccaatata-tagtatgaatatacaagtacaatctcaattttttgcaaaaactcaaaagagaaaaatgaagaaagagcatccattgttt |
16050155 |
T |
|
| Q |
218 |
gagaacccaaacagaaggatttt |
240 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
16050154 |
gagaaccaaaacagaaggatttt |
16050132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 30594432 - 30594209
Alignment:
| Q |
18 |
agcaactgcattttgttgctcttctcactgtaatttaatggagaacaattaacccttaaagctttaagtgcctctggaaaattaattggaacaatgattg |
117 |
Q |
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||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
30594432 |
agcaactgcattttgttgctcttctcactataatataatagagaacaattaacccttaaagctttaagcgcctctcgaaaattaattggaacaatgattg |
30594333 |
T |
|
| Q |
118 |
aagattaaaaatcgaat---ataatagtatgaatatacgagtacaatctcaattttttgcaaaaactcaaaagagaaaaatgaagaaggagcatccattg |
214 |
Q |
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||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
30594332 |
aagattaaaaatccaatataataatagtatgaatata--agtacaatctcaattttttgcaaaaactcaaaagagaaaaatgaagaaagagcatccattg |
30594235 |
T |
|
| Q |
215 |
tttgagaacccaaacagaaggatttt |
240 |
Q |
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|||||||||||||| | ||||||||| |
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| T |
30594234 |
tttgagaacccaaataaaaggatttt |
30594209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 35240803 - 35240954
Alignment:
| Q |
18 |
agcaactgcattttgttgctcttctcactgtaatttaatggagaacaattaacccttaaagctttaagtgcctctggaaaattaattggaacaatgattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35240803 |
agcaactgcattttgttgctcttctcacagtaatttaatggagaacaattaacccttaaagctttaagtgcctctggaaaattaattggaataatgattg |
35240902 |
T |
|
| Q |
118 |
aagattaaaaatcgaatataatagtatgaatatacgagtacaatctcaattt |
169 |
Q |
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||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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|
| T |
35240903 |
aagattaaaaatccaatataatagtatgaatatacaagtacaatctcaattt |
35240954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 32966666 - 32966568
Alignment:
| Q |
41 |
ctcactgtaatttaatggagaacaattaacccttaaagctttaagtgcctctggaaaattaattggaacaatgattgaagattaaaaatcgaatataata |
140 |
Q |
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|||| |||| |||||| ||||||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||| |||||||||| || |||||| |
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| T |
32966666 |
ctcaatgtattttaattgagaacaattaacccttaagctttttagtgcctccaaaaaattaat-ggaacaatgattgaaaattaaaaatccaaaataata |
32966568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 30202928 - 30202966
Alignment:
| Q |
30 |
ttgttgctcttctcactgtaatttaatggagaacaatta |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30202928 |
ttgttgctcttctcactgtaatttaatggagaacaatta |
30202966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 140
Target Start/End: Complemental strand, 53731926 - 53731815
Alignment:
| Q |
34 |
tgctcttctcactgtaatttaatggagaac-----aattaacccttaaagcttta-agtgcctctggaaaattaattggaacaatgattgaagattaaaa |
127 |
Q |
| |
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|||||||||||||||||||||| ||||||| ||||||||||| |||||||| |||||||| |||||||| ||||| |||||||||||||||| |
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| T |
53731926 |
tgctcttctcactgtaatttaacggagaacaactaaattaaccctt-aagctttatagtgcctccaaaaaattaacgagaacattgattgaagattaaaa |
53731828 |
T |
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| Q |
128 |
atcgaatataata |
140 |
Q |
| |
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||| || |||||| |
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| T |
53731827 |
atccaaaataata |
53731815 |
T |
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