View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_38 (Length: 239)
Name: NF11733_low_38
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 23668318 - 23668533
Alignment:
| Q |
12 |
gacatcactaactaactctcttaataccattaccattatgagggtgtcacattaaaa-tagtacgcattaaacaaagcaatctaatgtaagtaaataatt |
110 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||| ||||| |||||| ||||||||| |
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| T |
23668318 |
gacaacaccaactaactctcttaataccattatcattatgagcgtgtcacattaaaaatagtacgcattaagcaaagaaatctcatgtaaataaataatt |
23668417 |
T |
|
| Q |
111 |
tggtagctattnnnnnnnttcacttctttgtatcaagacaaatgatattacttcaggtagcagtttctttagtacttg-----agacaaactatgtgaag |
205 |
Q |
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| T |
23668418 |
tggtagctattaaaaaaattcacttctttgtatcaagacaaataatattacttcaggcagcagtttctttagtactagagacaagacaaactatgtgaag |
23668517 |
T |
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| Q |
206 |
tagaaacatctatgca |
221 |
Q |
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|||||||||||||||| |
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| T |
23668518 |
tagaaacatctatgca |
23668533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 24040594 - 24040809
Alignment:
| Q |
12 |
gacatcactaactaactctcttaataccattaccattatgagggtgtcacattaaaa-tagtacgcattaaacaaagcaatctaatgtaagtaaataatt |
110 |
Q |
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|||| ||| ||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||| ||||| |||||| ||||||||| |
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| T |
24040594 |
gacaacaccaactaactctcttaataccattatcattatgagcgtgtcacattaaaaatagtacgcattaagcaaagaaatctcatgtaaataaataatt |
24040693 |
T |
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| Q |
111 |
tggtagctattnnnnnnnttcacttctttgtatcaagacaaatgatattacttcaggtagcagtttctttagtacttg-----agacaaactatgtgaag |
205 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||| |
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| T |
24040694 |
tggtagctattaaaaaaattcacttctttgtatcaagacaaataatattacttcaggcagcagtttctttagtactagagacaagacaaactatgtgaag |
24040793 |
T |
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| Q |
206 |
tagaaacatctatgca |
221 |
Q |
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|||||||||||||||| |
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| T |
24040794 |
tagaaacatctatgca |
24040809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 23683990 - 23684074
Alignment:
| Q |
132 |
acttctttgtatcaagacaaatgatattacttcaggtagcagtttctttagtacttgagacaaactatgtgaagtagaaacatctatgca |
221 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
23683990 |
acttctttgtagcaagacaaatactattacttcaggtagcagtttc-----tcctagagacaaactatgtgaagtagaaacatctatgca |
23684074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 132 - 221
Target Start/End: Original strand, 24056227 - 24056311
Alignment:
| Q |
132 |
acttctttgtatcaagacaaatgatattacttcaggtagcagtttctttagtacttgagacaaactatgtgaagtagaaacatctatgca |
221 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
24056227 |
acttctttgtagcaagacaaatactattacttcaggtagcagtttc-----tcctagagacaaactatgtgaagtagaaacatctatgca |
24056311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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