View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_low_4 (Length: 713)

Name: NF11733_low_4
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_low_4
NF11733_low_4
[»] chr3 (10 HSPs)
chr3 (17-210)||(4183709-4183903)
chr3 (23-206)||(5970201-5970380)
chr3 (441-564)||(4184331-4184460)
chr3 (419-563)||(5964916-5965060)
chr3 (217-284)||(5051356-5051423)
chr3 (210-281)||(11498197-11498268)
chr3 (218-281)||(4141014-4141077)
chr3 (316-379)||(5964819-5964882)
chr3 (209-281)||(4080831-4080903)
chr3 (209-280)||(2918913-2918984)
[»] scaffold0603 (3 HSPs)
scaffold0603 (214-577)||(5564-5933)
scaffold0603 (609-713)||(5464-5568)
scaffold0603 (209-257)||(5473-5521)
[»] chr2 (3 HSPs)
chr2 (17-210)||(28049474-28049667)
chr2 (17-94)||(28050688-28050765)
chr2 (21-94)||(27971204-27971277)
[»] chr8 (2 HSPs)
chr8 (17-210)||(17230664-17230857)
chr8 (209-257)||(18387280-18387328)
[»] chr1 (1 HSPs)
chr1 (17-210)||(19850980-19851173)
[»] chr4 (2 HSPs)
chr4 (21-94)||(808275-808348)
chr4 (304-342)||(5988018-5988056)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 4183709 - 4183903
Alignment:
Q  17 actaggtacccagttctgttagagacattgca-gaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaag 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183709 actaggtacccagttctgttagagacattgcaagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaag 4183808  T
Q  116 atgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatgaatgaaatggattgaataagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  4183809 atgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaaacagaatgaatgaaatggcttgaataagtg 4183903  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 23 - 206
Target Start/End: Original strand, 5970201 - 5970380
Alignment:
Q  23 tacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaagatgatct 122  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| |||  ||||||||||  | ||| |||||||| ||||| |||||||||||| ||    
T  5970201 tacccagttctgttagagacattgcagaaccattttcttttcattgctttcgaaaatacactgaaatttgaaccatttgcttgatctgtaaagatgacct 5970300  T
Q  123 gagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatgaatgaaatggattgaata 206  Q
    |||||||| ||||    ||||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  5970301 gagtttaattagt----aacaataaatcccaataaagtcattgctaagtggctcaaaaacagaatgaatgaaatggcttgaata 5970380  T

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Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 441 - 564
Target Start/End: Original strand, 4184331 - 4184460
Alignment:
Q  441 actctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtg---acttcatcggcaagttccaggccacgaagcttgacgtttc- 536  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||||||||||||     
T  4184331 actctgctcactctcaacttctgtgaaggtgctgttagacaagattgtttctagtgagtacttcatcggcaagttccaggccacgaagcttgacgtttca 4184430  T
Q  537 --gctcttggaaaagcttaagacaatactt 564  Q
       |||||||||||||||||||||||||||    
T  4184431 ctactcttggaaaagcttaagacaatactt 4184460  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 419 - 563
Target Start/End: Original strand, 5964916 - 5965060
Alignment:
Q  419 tggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggcaagttccaggc 518  Q
    |||||||| |||||  | ||||||||  |||||||||| |||||||||||||| ||||| |||||| |||||||||| | ||| ||| ||| |||||       
T  5964916 tggttgatgaatctcctatacaactcgtctcactctcagcttctgtgaaggtgttgttaaacaagattgtttctagtcagttcgtcgacaacttccacag 5965015  T
Q  519 cacgaagcttgacgtttcgctcttggaaaagcttaagacaatact 563  Q
    ||| || ||||| ||||| ||||||||||||||||||||||||||    
T  5965016 cactaaacttgatgtttcactcttggaaaagcttaagacaatact 5965060  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 5051356 - 5051423
Alignment:
Q  217 tatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagtaga 284  Q
    |||||| ||||||||||||| ||||||||| | |||||||||||| ||||||| ||||||||||||||    
T  5051356 tatgctctctttgaagttgataatttgttttacgaaatcaagactgaggcgttacgctgcaaagtaga 5051423  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 11498268 - 11498197
Alignment:
Q  210 gctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagt 281  Q
    |||| ||| |||||||| ||||||| |||||||  ||||||||||||| ||| |||||||||||||||||||    
T  11498268 gctgagatttgctgtctatgaagttcacaatttcgttgatgaaatcaacactgaggcgttgcgctgcaaagt 11498197  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 4141014 - 4141077
Alignment:
Q  218 atgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagt 281  Q
    ||||||||| ||||| ||||||||||||||| |||||||| ||| |||| ||||| ||||||||    
T  4141014 atgctgtctatgaagctgacaatttgtttgacgaaatcaacactgaggcattgcggtgcaaagt 4141077  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 5964819 - 5964882
Alignment:
Q  316 ttgcaaaaattaattgaaaaattagaaggcttgagttcgggagaacatgtaggtgaattaggtg 379  Q
    |||| |||||||||||||||||| ||||||| |||||| ||||||||  ||||| |||||||||    
T  5964819 ttgcgaaaattaattgaaaaatttgaaggctggagttctggagaacagctaggtaaattaggtg 5964882  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 281
Target Start/End: Complemental strand, 4080903 - 4080831
Alignment:
Q  209 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagt 281  Q
    ||||| || ||||||||||||||| ||| |||||||| || |||||||| ||| |||| ||||| ||||||||    
T  4080903 tgctgcgagatgctgtctttgaagctgataatttgttagacgaaatcaacactgaggcattgcggtgcaaagt 4080831  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 2918913 - 2918984
Alignment:
Q  209 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaag 280  Q
    |||||||||||||||||||||||||| ||||| ||||| |  ||||||| | | |||||||  |||||||||    
T  2918913 tgctgggatatgctgtctttgaagttcacaatctgtttaaccaaatcaatattgaggcgttcagctgcaaag 2918984  T

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Target: scaffold0603 (Bit Score: 170; Significance: 7e-91; HSPs: 3)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 214 - 577
Target Start/End: Complemental strand, 5933 - 5564
Alignment:
Q  214 ggatatgctgtctttgaagttgacaatttgtttgatgaaatcaagactaaggcgttgcgctgcaaagtagagtctgagttcaggagggtcattaattcta 313  Q
    ||||||||||||||||||||| || ||||||||| ||||||||||||| | ||||||||||||||||||||   |||||||||| ||||||| |||||||    
T  5933 ggatatgctgtctttgaagttcacgatttgtttggtgaaatcaagactgaagcgttgcgctgcaaagtagacggtgagttcaggtgggtcatgaattcta 5834  T
Q  314 aattgcaaaaattaattgaaaaattagaag---gcttgagttcgggagaacatgtaggtgaattaggtgttttcaaaagtgattggaatcaaattcctcc 410  Q
    |||||| | |||||||||||| ||||||||   | ||||||||||||||||| || ||  |||||  ||||||||||||||||||| ||  || |||| |    
T  5833 aattgcgagaattaattgaaagattagaagaaggattgagttcgggagaacaggttggcaaattaaatgttttcaaaagtgattggtatggaactcctac 5734  T
Q  411 taaa---gatttggttgataaatcttttctacaactctgctcactctcaacttctgtgaaggtgctgttagacaagactgtttctagtgacttcatcggc 507  Q
     ||    | ||||||||||||||||| ||||||| ||| ||||||||||| |||||||    |||||||| |||||| ||||||||||||||||||||||    
T  5733 aaattctgttttggttgataaatcttctctacaattctactcactctcaatttctgtgtcactgctgttaaacaagattgtttctagtgacttcatcggc 5634  T
Q  508 aagttccaggccacgaagcttgacgtttcgctcttggaaaagcttaagacaatacttgtgcgggttcttc 577  Q
    || |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  |||||||    
T  5633 aacttccaggccatgaagcttgacgtttcactcttggaaaagcttaagacaatacttgtgcccgttcttc 5564  T

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Target: scaffold0603; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 609 - 713
Target Start/End: Complemental strand, 5568 - 5464
Alignment:
Q  609 tcttcatgatgctgtagacaaacatactttcaggctttggctgtgtatgctgaaagatgctatctttgaacttctaaatttgtttgacgaaatcaaccgt 708  Q
    ||||| |||||||||||||| || ||||||| |||||||||||| ||||||| || ||| | |||||||| |||  ||||||||||||||||||||||||    
T  5568 tcttcttgatgctgtagacatacttactttcgggctttggctgtatatgctggaatatgatgtctttgaagttcacaatttgtttgacgaaatcaaccgt 5469  T
Q  709 gaggc 713  Q
    |||||    
T  5468 gaggc 5464  T

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Target: scaffold0603; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 5521 - 5473
Alignment:
Q  209 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaa 257  Q
    |||||| ||||| ||||||||||||| ||||||||||||| ||||||||    
T  5521 tgctggaatatgatgtctttgaagttcacaatttgtttgacgaaatcaa 5473  T

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Target: chr2 (Bit Score: 166; Significance: 2e-88; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 28049667 - 28049474
Alignment:
Q  17 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  28049667 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaatcatttacttgacctgtaaaga 28049568  T
Q  117 tgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatgaatgaaatggattgaataagtg 210  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  28049567 tgacctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggctcaaaaacagaatgaatgaaatggcttgaataagtg 28049474  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 28050765 - 28050688
Alignment:
Q  17 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaa 94  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  28050765 actaggtacccggttctgttagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaa 28050688  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 27971277 - 27971204
Alignment:
Q  21 ggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaa 94  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  27971277 ggtacccggttctattagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaa 27971204  T

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Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 17230857 - 17230664
Alignment:
Q  17 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  17230857 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgatttcaaaaatacactcaagttttaaccatttacttgacctgtaaaga 17230758  T
Q  117 tgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatgaatgaaatggattgaataagtg 210  Q
    ||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||    
T  17230757 tgacctgagtttaactagtcacaaacaatatatcacgataaagtcattgctaagtggctcaaaaacagaatgaatgaaatggcttgaataagtg 17230664  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 18387280 - 18387328
Alignment:
Q  209 tgctgggatatgctgtctttgaagttgacaatttgtttgatgaaatcaa 257  Q
    |||||||||||||||||||||||||||| |||||||||||  |||||||    
T  18387280 tgctgggatatgctgtctttgaagttgataatttgtttgacaaaatcaa 18387328  T

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Target: chr1 (Bit Score: 162; Significance: 4e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 19851173 - 19850980
Alignment:
Q  17 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaaccatttacttgacctgtaaaga 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||| ||||||||    
T  19851173 actaggtacccagttctgttagagacattgcagaaccatattcttttaattgatttcaaaaataaactcaagttttaaccatttacttgacttgtaaaga 19851074  T
Q  117 tgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggatcaaaatcagaatgaatgaaatggattgaataagtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||||    
T  19851073 tgatctgagtttaactagtaacaaacaatatatcacaataaagtcattgctaagtggctcaaaaatagaatgaatgaaatggcttgaataagtg 19850980  T

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Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 808275 - 808348
Alignment:
Q  21 ggtacccagttctgttagagacattgcagaaccatattcttttaattgattttaaaaatacactcgagttttaa 94  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  808275 ggtacccggttctgttagagacattgcagaaccatattcttttaattgatttcaaaactacactcaagttttaa 808348  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 5988018 - 5988056
Alignment:
Q  304 attaattctaaattgcaaaaattaattgaaaaattagaa 342  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  5988018 attaattctaaattgcaaaaattaattgaaagattagaa 5988056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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