View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11733_low_5 (Length: 678)
Name: NF11733_low_5
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11733_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 663
Target Start/End: Complemental strand, 3922873 - 3922211
Alignment:
| Q |
1 |
gtgcattatacggcagacctttgtttcctgcagtacactacttcttaccattgtcgcctacacagtttgatactttaagaaatcaagcttttcgtattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3922873 |
gtgcattatacggcagacctttgtttcctgcagtacactacttcttaccattgtcgcctacacagtttgatactttaagaaatcaagcttttcgcattat |
3922774 |
T |
|
| Q |
101 |
atcagtgagtttaagcgaggcggaaccagcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaata |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922773 |
atcagtgagtttaagcgaggcggaaccggcacttagggaagaagttgtgtcttatatgcttgatatgagatcagatatgtggagtatgagaaaaggaata |
3922674 |
T |
|
| Q |
201 |
gcaaactataacaggatcatgagtcttattagttacnnnnnnnnnnnnnggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922673 |
gcaaactataacaggatcatgagtcttattagttacttttttgctttttggaaatggttagaggacataaggcaatggaagaatccaattgaagcagtgc |
3922574 |
T |
|
| Q |
301 |
tttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataattt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922573 |
tttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggataattataattt |
3922474 |
T |
|
| Q |
401 |
caagaagcatgagcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgatttctttccaact |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3922473 |
caagaagcatgagcatccttgtcacatagatgcaacattatctggtgctgatacaacaaattatgatgatttagaagaagaacttgttttctttccaact |
3922374 |
T |
|
| Q |
501 |
caaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaa |
600 |
Q |
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| T |
3922373 |
caaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattggccaccattttagaaa |
3922274 |
T |
|
| Q |
601 |
agctacaatctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
663 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3922273 |
agctacaatctctgatcagttggagggatccaagagctacatttatatttttggtgttctgtg |
3922211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 290 - 632
Target Start/End: Original strand, 34958057 - 34958404
Alignment:
| Q |
290 |
tgaagcagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
389 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34958057 |
tgaaacagtgctttttcatattttttgcttatgtgtgcttttgtatccagagccaatgatacctttggtgagtttctatcttttcaagattggtttggat |
34958156 |
T |
|
| Q |
390 |
aattataatttcaagaagcatgagcatccttgtcacatagatgcaacatta-----tctggtgctgatacaacaaattatgatgatttagaagaagaact |
484 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34958157 |
aattataatttcaaaaagcatgagcatccttgtcacatagatgcaacattatattatctggtgctgatacaacaaattctgatgatttagaagaagaact |
34958256 |
T |
|
| Q |
485 |
tgatttctttccaactcaaattggaggtgaacatttgagaaggaggtatgataggttgagagtcattggtaggaatggacaaaaaagggttgatgaattg |
584 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |
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| T |
34958257 |
tgatttctttccaactcaaactggaggtgaagatttgagaaggaggtatgataggttgagagtcattggcaggaatgcacaaaaaagggttgatcaatta |
34958356 |
T |
|
| Q |
585 |
gccaccattttagaaaagctacaatctctgatcagttggagggatcca |
632 |
Q |
| |
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|| |||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34958357 |
gctaccattttagaaaagctacaatttctgatcagttggagggatcca |
34958404 |
T |
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