View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11733_low_8 (Length: 578)

Name: NF11733_low_8
Description: NF11733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11733_low_8
NF11733_low_8
[»] chr8 (2 HSPs)
chr8 (197-374)||(26521376-26521553)
chr8 (200-374)||(34314521-34314703)
[»] chr3 (2 HSPs)
chr3 (197-372)||(34826075-34826250)
chr3 (197-373)||(46652301-46652485)
[»] chr7 (2 HSPs)
chr7 (197-374)||(7848632-7848809)
chr7 (233-374)||(47577993-47578134)
[»] chr1 (3 HSPs)
chr1 (197-374)||(35712928-35713113)
chr1 (200-354)||(30232194-30232346)
chr1 (298-330)||(30232156-30232188)
[»] chr2 (4 HSPs)
chr2 (197-374)||(29042981-29043162)
chr2 (197-320)||(32601860-32601989)
chr2 (272-374)||(45412886-45412988)
chr2 (200-239)||(45413006-45413045)
[»] chr5 (3 HSPs)
chr5 (200-372)||(27490636-27490816)
chr5 (272-374)||(24242587-24242689)
chr5 (200-265)||(24242673-24242747)


Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 197 - 374
Target Start/End: Complemental strand, 26521553 - 26521376
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaacacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatctg 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26521553 cagatcataccctccacccctccaatcaagaaacagcaacacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatatg 26521454  T
Q  297 ggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26521453 ggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 26521376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 200 - 374
Target Start/End: Complemental strand, 34314703 - 34314521
Alignment:
Q  200 atcataccctccacccctccaatcaagaaacagcaacacag--------tcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttga 291  Q
    ||||||||||||| ||||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  34314703 atcataccctccatccctccaatcaagaaacagcaacacaagaacacaatcaagaaattgaaagagagaattttcgaattttgaaagagaggatttttga 34314604  T
Q  292 atctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  34314603 atctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttttattggaagaggaagcaatctgg 34314521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 152; Significance: 3e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 197 - 372
Target Start/End: Original strand, 34826075 - 34826250
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaacacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatctg 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||      
T  34826075 cagatcataccctccacccctccaatcaagaaacagcaacacagtcaagaaattgaaaaagagaattttcgaattttgaaagagagaatttttgaatccc 34826174  T
Q  297 ggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatct 372  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34826175 gatttttgattcttcatacatggaattgatttttaaccacttgggtttgatttttgattggaagaggaagcaatct 34826250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 197 - 373
Target Start/End: Complemental strand, 46652485 - 46652301
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaacacag--------tcaagaaattgaaagagaggattttcgaattttgaaagagagaatttt 288  Q
    ||||||||||||||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||||||||||||||||||| |||||    
T  46652485 cagatcataccctccacccctccaatcaagaaacaacaacacaacaacacaatcaagaaattgaaagagaggattttcgaattttgaaagagaggatttt 46652386  T
Q  289 tgaatctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctg 373  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46652385 tgaatctgggtttttgattcttcatacatggaattgatttctaaccacttgggtttgattttcgattggaagaggaagcaatctg 46652301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 197 - 374
Target Start/End: Complemental strand, 7848809 - 7848632
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaacacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatctg 296  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||    
T  7848809 cagatcataccctccacccctccaatcaagaaacaacaacacaatcaagaaattgaaagagaggattttcaaattttgaaagagaggatttttgaatttg 7848710  T
Q  297 ggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 374  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7848709 ggtttttgattcatcatacatggaattgatttttaaccacttgggtttgattttcgattggaggaggaagcaatctgg 7848632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 233 - 374
Target Start/End: Complemental strand, 47578134 - 47577993
Alignment:
Q  233 caacacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttgaatctgggtttttgattcttcatacatggaattgatttttaa 332  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||    
T  47578134 caacacaatcaagaaattgaaagagagaattttcgaattttgaaagagaggatttttgaatatgagtttttgattcttcatacatggaattgatttttaa 47578035  T
Q  333 ccacttgggtttgattttcgattggaagaggaagcaatctgg 374  Q
    |||||| |||||||||||||||||||||||||||| ||||||    
T  47578034 ccacttaggtttgattttcgattggaagaggaagccatctgg 47577993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 197 - 374
Target Start/End: Original strand, 35712928 - 35713113
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaacacag--------tcaagaaattgaaagagaggattttcgaattttgaaagagagaatttt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||| |||||    
T  35712928 cagatcataccctccacccctccaatcaagaaacagcaacacaacaacacaatcaagaaattgaaagagaggattttcgaattttgaaagagaggatttt 35713027  T
Q  289 tgaatctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 374  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35713028 tgaatctgggtttttaattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaataggaagcaatctgg 35713113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 200 - 354
Target Start/End: Complemental strand, 30232346 - 30232194
Alignment:
Q  200 atcataccctccacccctccaatcaagaaacagcaacacagtcaagaaattgaaagagaggattttcgaattttga----aagagagaatttttgaatct 295  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || ||||| |||||||||    ||||||||||||| |||       
T  30232346 atcataccctccaccccttcaatcaagaaacagcaacacaatcaagaaattgaaagatagaatttttgaattttgaaagaaagagagaattttcgaa--- 30232250  T
Q  296 gggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgat 354  Q
       ||||| ||||||||||||||||||| |||||||| ||  |||||||||||||||||    
T  30232249 ---ttttttattcttcatacatggaatttatttttaatcatctgggtttgattttcgat 30232194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 30232188 - 30232156
Alignment:
Q  298 gtttttgattcttcatacatggaattgattttt 330  Q
    |||||||||||||||| ||||||||||||||||    
T  30232188 gtttttgattcttcatgcatggaattgattttt 30232156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 197 - 374
Target Start/End: Complemental strand, 29043162 - 29042981
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaacacag--------tcaagaaattgaaagagaggattttcgaattttgaaagagagaatttt 288  Q
    |||||||||||||||||||||| |||||||||||| |||||||         ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29043162 cagatcataccctccacccctcaaatcaagaaacaacaacacaacaacacaatcaagaaattgaaagagaggattttcgaattttgaaagacagaatttt 29043063  T
Q  289 tgaatctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 374  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29043062 tgaatctgggtttttgattcttcatacatgga----atttttaaccacttgggtttgattttcgattggaagaggaagcaatctgg 29042981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 32601989 - 32601860
Alignment:
Q  197 cagatcataccctccacccctccaatcaagaaacagcaac------acagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttg 290  Q
    ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32601989 cagatcataccctccacccctccaatcaagaaacagcaacccaacaacagtcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttg 32601890  T
Q  291 aatctgggtttttgattcttcatacatgga 320  Q
    ||||||||||||||||||||||| ||||||    
T  32601889 aatctgggtttttgattcttcatccatgga 32601860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 272 - 374
Target Start/End: Complemental strand, 45412988 - 45412886
Alignment:
Q  272 ttgaaagagagaatttttgaatctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatc 371  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45412988 ttgaaagagaggatttttgaatccgggtttttgattcttcatacatggaattgatttttaatcacttgggtttgattttcgattggaagaggaagcaatc 45412889  T
Q  372 tgg 374  Q
    |||    
T  45412888 tgg 45412886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Complemental strand, 45413045 - 45413006
Alignment:
Q  200 atcataccctccacccctccaatcaagaaacagcaacaca 239  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  45413045 atcataccctccacccctcaaatcaagaaacggcaacaca 45413006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 200 - 372
Target Start/End: Complemental strand, 27490816 - 27490636
Alignment:
Q  200 atcataccctccacccctccaatcaagaaacagcaacacag--------tcaagaaattgaaagagaggattttcgaattttgaaagagagaatttttga 291  Q
    |||||||||||||||||||| ||||||||||| |||||||         |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  27490816 atcataccctccacccctccgatcaagaaacaacaacacaacaacacaatcaagaaattgaaagagaggattttcaaattttgaaagagaggatttttga 27490717  T
Q  292 atctgggtttttgattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaatct 372  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  27490716 atctgagtttttgattcttcatacatggatttgatttttaaccacttgagtttgattttcgattggaagagaaagccatct 27490636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 272 - 374
Target Start/End: Complemental strand, 24242689 - 24242587
Alignment:
Q  272 ttgaaagagagaatttttgaatctgggtttttg-attcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaat 370  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24242689 ttgaaagagaggatttt-gaatctgggtttttgtattcttcatacatggaattgatttttaaccacttgggtttgattttcgattggaagaggaagcaat 24242591  T
Q  371 ctgg 374  Q
    ||||    
T  24242590 ctgg 24242587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 265
Target Start/End: Complemental strand, 24242747 - 24242673
Alignment:
Q  200 atcataccctccacccctccaatcaagaaa---------cagcaacacagtcaagaaattgaaagagaggatttt 265  Q
    ||||||||||||||||||| ||||||||||         || ||||||| |||||||||||||||||||||||||    
T  24242747 atcataccctccacccctcaaatcaagaaaacggcaacacaacaacacaatcaagaaattgaaagagaggatttt 24242673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University