View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11734_high_1 (Length: 827)
Name: NF11734_high_1
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 9e-94; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 135 - 341
Target Start/End: Original strand, 14929251 - 14929457
Alignment:
| Q |
135 |
atattaatggtcaaagttatgtattgacatgtagtaaggttaacgtgtcaattaatatggatcagacggaggaatatttatgagaatgttttcatgaatt |
234 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| |
|
|
| T |
14929251 |
atattagtggtcaaagttgtgtattgacatgtagtaaggttaatgtgtcaattaatatggatcagacggagtaatattcatgagagtgttttcatgaatt |
14929350 |
T |
|
| Q |
235 |
tatttcagggatgataggtatgaattatcaagttatgatgtcaagcttgcttccattgtaagcaagttaaaggctcatcttacaaggagcagaaagcata |
334 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14929351 |
tgtttcagggatgataggtatgaattatcaagttatgatgtcaagcttgcttccattgtaagcaaattaaaggctcatcttacaaggagcagaaagcata |
14929450 |
T |
|
| Q |
335 |
taggtaa |
341 |
Q |
| |
|
||||||| |
|
|
| T |
14929451 |
taggtaa |
14929457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 539 - 746
Target Start/End: Original strand, 14929588 - 14929795
Alignment:
| Q |
539 |
agatgccaattataagtcatttgtgtatattgcaggtgagctggaagattactggaggcgtaagagggttcttcaaactccaacagaaattgttgaggtt |
638 |
Q |
| |
|
||||||||||||||| | || | |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929588 |
agatgccaattataaattatgtatgtaaattgcaggtgagctagaagattactggagacgtaagagggttcttcaaactccaacagaaattgttgaggtt |
14929687 |
T |
|
| Q |
639 |
ttgaaggttctagttttccacaatgaaattcaggacccccttgtgtttgatggcttgaacagacaaatggttagttaatattcaaatgtggctcatgttt |
738 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
14929688 |
ttgaaggttctagtcttccacaatgaaattcaggacccccttgtgtttgatggcttgaacagacaaatggttagttaatatttaaatgtggttcatgttt |
14929787 |
T |
|
| Q |
739 |
aaagatat |
746 |
Q |
| |
|
|||||||| |
|
|
| T |
14929788 |
aaagatat |
14929795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 14929120 - 14929169
Alignment:
| Q |
16 |
ctaatcatcttgatcttcttttcggtgattcgtaagtactttaattcctt |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14929120 |
ctaatcatcttgatcttcttttcggtgattcgtaagtactttaattcctt |
14929169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 740 - 797
Target Start/End: Original strand, 14929818 - 14929875
Alignment:
| Q |
740 |
aagatatgactgaattgtccgctatattggtcactaacaatggcaactaatatcgaca |
797 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
14929818 |
aagatatgattgaattgtccgctatattggtcgctaacaatagcaactaatatcgaca |
14929875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 397 - 450
Target Start/End: Original strand, 14929510 - 14929563
Alignment:
| Q |
397 |
ggagctacaaacactgaattttcaatgcattatttggaaacatacatacattga |
450 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
14929510 |
ggagatacaaacactgaatttttaatgcattatttggaaacacacatacattga |
14929563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 38767155 - 38767110
Alignment:
| Q |
121 |
atagataagtaatgatattaatggtcaaagttatgtattgacatgt |
166 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
38767155 |
atagataactaaagatattaatggtcaaagttttgtattgacatgt |
38767110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University