View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_high_14 (Length: 382)
Name: NF11734_high_14
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 365
Target Start/End: Original strand, 24615395 - 24615745
Alignment:
| Q |
17 |
agaaaggggggctgaagatataaggaataattaatagagtcaaattttgaa--gaacataagaaagaaacgtggattcaattgagatggtaaagaaatgc |
114 |
Q |
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| T |
24615395 |
agaaaggggggctgaagatataaggaataattaatagagtcaaattttgtatagaacataagaaagaaacgtggattcaattgagatggtaaagaaatgc |
24615494 |
T |
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| Q |
115 |
ttcccaattcaactagatcgtctgctcatagttttaagatttctttgtttttctcttcacaattatcaagatataacatgaaacaattctgaggagtttc |
214 |
Q |
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| T |
24615495 |
ttcccaattcaactagatcgtctgctcatagttttaagatttctttgtttttctcttcacaattatcaagatataacatgaaacaattctgaggagtttc |
24615594 |
T |
|
| Q |
215 |
tctagggagccccttctaaccctgaaatatagagttggcacttataaggccagtgactaccacatgctgcataaccattcaccagaagagtagaataaag |
314 |
Q |
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| T |
24615595 |
tctagggagccccttctaaccctgaaatatagagttggcacttataaggccagtgactaccacatgctgcataaccattcaccagaagagtagaataaag |
24615694 |
T |
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| Q |
315 |
tcgaactatttttatatatagttataataagttgtgaatagaaataatgat |
365 |
Q |
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| T |
24615695 |
tcgaactatttttatatatagttataataagttgtgaatagaaataatgat |
24615745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 24115908 - 24115638
Alignment:
| Q |
17 |
agaaaggggggctgaagatataaggaataattaatagagtcaaattttgaagaacataagaaagaaa----cgtggattcaattgagatggtaaagaaat |
112 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||||||||| |||||||| |||| |
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| T |
24115908 |
agaaaggggcaccgaagatataaggaataattaatagagtcaaattttgtagaacataagaaagaaagcaacattgattcaattga-atggtaaataaat |
24115810 |
T |
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| Q |
113 |
gcttcccaattcaactagatcgtctgctcatagttttaagatttctttgtttttctcttcacaattatcaagatataacatgaaac-----------aat |
201 |
Q |
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||||||||||||||||| || |||||||||| |||| | |||||| ||||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
24115809 |
gcttcccaattcaactaaattgtctgctcatggtttagatatttctctgttttt-tattcacaattatcaagatataacatgaaacaattaagagaaaat |
24115711 |
T |
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| Q |
202 |
tctgaggagtttctctagggagccccttctaaccctgaaatatagagttggcacttataaggccagtgactac |
274 |
Q |
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| T |
24115710 |
tatgaggagtttctctaggcagccccttctaaccctgaaatatagagttagtacttataaggtctgtgactac |
24115638 |
T |
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