View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_high_26 (Length: 250)
Name: NF11734_high_26
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27944721 - 27944484
Alignment:
| Q |
1 |
caatcactctcatccaacacatctttgtcttttccattgaatgaaacagcagaaccacttgaagtgtatataaatctcttcactgtctttgaattcacac |
100 |
Q |
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| T |
27944721 |
caatcactctcatccaacacatctttgtcttttccattgaatgaaacagcagaaccacttgaagtgtatataaatctcttcactgtctttgaattcacac |
27944622 |
T |
|
| Q |
101 |
atgcttttaaaatgcctaatgcgccgtcgactgttctttttgtcactatttcttctggttcactcacagcgaagtcaattggcgaagcggtgtggaatat |
200 |
Q |
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| T |
27944621 |
atgcttttaaaatgcctaatgcgccgtcgactgttctttttgtcactatttcttctggttcactcacagcgaagtcaattggcgaagcggtgtggaatat |
27944522 |
T |
|
| Q |
201 |
cccgacacagccttcgattgctgcagcgaaactgtctg |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27944521 |
cccgacacagccttcgattgctgcagcgaaactgtctg |
27944484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 28013393 - 28013201
Alignment:
| Q |
46 |
acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaattcacacatgcttttaaaatgcctaatgcgccgtcgactgttctttttgtca |
145 |
Q |
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| T |
28013393 |
acagcagaagcacttgaagtgtaaataactctcttcacggtctttgaatttttgcatgcttttagaattcctaatgttccatcaattgttctttttgtca |
28013294 |
T |
|
| Q |
146 |
ctatttcttctggttcactcacagcgaagtcaattggcgaagcggtgtggaatatcccgacacagccttcgattgctgcagcgaaactgtctg |
238 |
Q |
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| T |
28013293 |
ctgtttcttctgattcattcatttccaaatcaattggagtagcagtgtggaatattccaatgcatccttcaattgctgcattgaaactttctg |
28013201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 238
Target Start/End: Complemental strand, 27959225 - 27959033
Alignment:
| Q |
46 |
acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaattcacacatgcttttaaaatgcctaatgcgccgtcgactgttctttttgtca |
145 |
Q |
| |
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||||||||| ||||||||||||| |||| ||| ||||||||||||||||| |||||||||| ||| |||||||| || || | ||||||||||||| |
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| T |
27959225 |
acagcagaagcacttgaagtgtaaataactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttgtca |
27959126 |
T |
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| Q |
146 |
ctatttcttctggttcactcacagcgaagtcaattggcgaagcggtgtggaatatcccgacacagccttcgattgctgcagcgaaactgtctg |
238 |
Q |
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| T |
27959125 |
ctatttcctcccgttcgttctcttcaaaatcaattggagtagctgtgtggaatattccaatgcacccttcaattgctgcatcgaaactttctg |
27959033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 157
Target Start/End: Complemental strand, 28005444 - 28005343
Alignment:
| Q |
56 |
cacttgaagtgtatataaatctcttcactgtctttgaattcacacatgcttttaaaatgcctaatgcgccgtcgactgttctttttgtcactatttcttc |
155 |
Q |
| |
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||||||||||||| |||| ||||||||| ||||||||||| |||||||||| ||| |||||||| || || | |||||||||||||||| ||||||| |
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| T |
28005444 |
cacttgaagtgtaaataactctcttcacggtctttgaatttttgcatgcttttagaattcctaatgctccatcaattgttctttttgtcactgtttcttc |
28005345 |
T |
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| Q |
156 |
tg |
157 |
Q |
| |
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|| |
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|
| T |
28005344 |
tg |
28005343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 27985533 - 27985418
Alignment:
| Q |
46 |
acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaattcacacatgcttttaaaatgcctaatgcgccgtcgactgttctttttgtca |
145 |
Q |
| |
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||||||||| ||||||| ||||| | || ||| ||||||||||||||||| |||||||||| ||| |||||||| || || | ||||||||| ||| |
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| T |
27985533 |
acagcagaagcacttgaggtgtaaacaactcttttcactgtctttgaatttttgcatgcttttagaattcctaatgccccatcaatggttctttttatca |
27985434 |
T |
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| Q |
146 |
ctatttcttctggttc |
161 |
Q |
| |
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| ||||| |||||||| |
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| T |
27985433 |
caatttcctctggttc |
27985418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 27994715 - 27994600
Alignment:
| Q |
46 |
acagcagaaccacttgaagtgtatataaatctcttcactgtctttgaattcacacatgcttttaaaatgcctaatgcgccgtcgactgttctttttgtca |
145 |
Q |
| |
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||||||||| |||| || ||||| |||| ||| |||| |||||||||||| |||||||||| ||| |||||||| || || | ||||||||||||| |
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| T |
27994715 |
acagcagaagcactagaggtgtaaataactcttttcaatgtctttgaatttttgcatgcttttagaattcctaatgctccatcaatggttctttttgtca |
27994616 |
T |
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| Q |
146 |
ctatttcttctggttc |
161 |
Q |
| |
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||||||| || ||||| |
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| T |
27994615 |
ctatttcctcaggttc |
27994600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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