View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_high_3 (Length: 677)
Name: NF11734_high_3
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 48 - 661
Target Start/End: Complemental strand, 28284119 - 28283527
Alignment:
| Q |
48 |
ccctcacttttccaaaaacacatatgcccctt-ctagtcaaatttccacgagtaggaagacaaccaaaaataagttggcatgaaaatatttggacctttt |
146 |
Q |
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| T |
28284119 |
ccctcacttttccaaaaacacat--gcccctttctagtcaaatttccacgagtaggaagacaaccaaaaataatttggcatgaaaatatttggacctttt |
28284022 |
T |
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| Q |
147 |
-gttggatgaaatcgatgaatttttctataacttgtaaaaagaatttaaaaaatatagtttctaagtacttgatgaaattcatgaattaagtgtactaat |
245 |
Q |
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| T |
28284021 |
tgttggatgaaatagatgaatttttctataacttgtaaaaagaatttaataaatttagtttctaagtacttgatgaaat--------------------- |
28283943 |
T |
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| Q |
246 |
tattgaatatattatgtaagtgtttaatccatttttatcataggatgttgttatgcatttgcgacaacagcagcggtagaaggaattatgaaaatcaaaa |
345 |
Q |
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| T |
28283942 |
tattgaatatattatgttagtgtttaatccatttttatcataggatgttgttatgcatttgcgacaacagcagcggtagaaggaattatgaaaatcaaaa |
28283843 |
T |
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| Q |
346 |
ccgataaggaattgacgtcgctatctatgcaagaattggtagactgtgacaaagcgaatggtggatgcgaaggaggtagcgtacgaaaagctttagagta |
445 |
Q |
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| T |
28283842 |
ccgataaggaattgacgtcactatctatgcaagaattggtagactgtgacaaagcgaatggtggatgcgaaggaggtagcgtacgaaaagctttagagta |
28283743 |
T |
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| Q |
446 |
tatgaagaccaatggaatagcaaaagatgtggattatccttacacagaaaaagtgggtacatgccttagcaacagaaaagaccgtgctgcaaaaattgat |
545 |
Q |
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| T |
28283742 |
tatgaagaccaatggaatagcaaaagatgtggattatccttacacagaaaaagtgggtacatgccttagcaacaaaaaagaccgtgctgcgaaaattgat |
28283643 |
T |
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| Q |
546 |
ggttatgtaatagtatcacccggcgaacaaaacctattagaagcagtggcagaacagccggttacagttgcaatcgcgattaacgatgacttcaagaaat |
645 |
Q |
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| T |
28283642 |
ggttatgtaatagtatcacccggcgaacaaaacctattagaagcagtggcacaacagccggttacagttgcaatcgcgattaacgatgacttcaagaaat |
28283543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 344
Target Start/End: Original strand, 27349025 - 27349137
Alignment:
| Q |
232 |
ttaagtgtactaattattgaatatattatgtaagtgtttaatccatttttatcataggatgttgttatgcatttgcgacaacagcagcggtagaaggaat |
331 |
Q |
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| T |
27349025 |
ttaagtgtactatttaattaatatattgtccgattgattaatccgttttaattataggaagttgttgggcatttgcggtaactgcaacggtagaaggaat |
27349124 |
T |
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| Q |
332 |
tatgaaaatcaaa |
344 |
Q |
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| T |
27349125 |
tatgaaaatcaaa |
27349137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 28004353 - 28004449
Alignment:
| Q |
300 |
gcatttgcgacaacagcagcggtagaaggaattatgaaaatcaaaaccgataaggaattgacgtcgctatctatgcaagaattggtagactgtgacaaag |
399 |
Q |
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| T |
28004353 |
gcatttgcgacattggcagcggtagaaggaattgtgcaaatcaaaa---acagggaattggtgtcgctatctgcgcaataattggtggactgtgacaaag |
28004449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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