View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_high_33 (Length: 229)
Name: NF11734_high_33
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 9 - 219
Target Start/End: Original strand, 21902476 - 21902686
Alignment:
| Q |
9 |
ttccatctcaaatagcgaaacaaggtaacgtctatatatatactataacaataccgttatgattacaaaatatacatgaaggtttatccttgccaatgaa |
108 |
Q |
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| T |
21902476 |
ttccatctcaaatagcgaaacaaggtaatgtctatatatatactataataatatcgttatgattacaaaatatacatgaagatttatctttgccaatgaa |
21902575 |
T |
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| Q |
109 |
gcaccaatatagacacgaaactgacatgtagacactactaattagaaaatgtaaatgattaaatgtaactgcatgtgtcggtgttgaacactagacacgc |
208 |
Q |
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| T |
21902576 |
gcaccaatatagacacggaactgacatgtagacactactattaagaaaatgtaaatgattaaatgtaactacatgtgtctgtgttggacaccagacacgc |
21902675 |
T |
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| Q |
209 |
cttcaatctaa |
219 |
Q |
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|||||||||| |
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| T |
21902676 |
tttcaatctaa |
21902686 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 41686815 - 41686779
Alignment:
| Q |
180 |
catgtgtcggtgttgaacactagacacgccttcaatc |
216 |
Q |
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||||||| |||||||||||| |||||||||||||||| |
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| T |
41686815 |
catgtgttggtgttgaacaccagacacgccttcaatc |
41686779 |
T |
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