View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11734_high_5 (Length: 616)

Name: NF11734_high_5
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11734_high_5
NF11734_high_5
[»] chr1 (17 HSPs)
chr1 (409-588)||(6058441-6058620)
chr1 (299-371)||(1787371-1787443)
chr1 (76-138)||(24847783-24847845)
chr1 (84-138)||(24848420-24848474)
chr1 (96-139)||(16449554-16449597)
chr1 (96-139)||(16459128-16459171)
chr1 (96-138)||(26240877-26240919)
chr1 (275-319)||(36565775-36565818)
chr1 (96-138)||(26240114-26240156)
chr1 (203-245)||(32305526-32305568)
chr1 (99-136)||(1099893-1099930)
chr1 (168-234)||(13303925-13303991)
chr1 (202-243)||(48419962-48420003)
chr1 (275-319)||(4198230-4198273)
chr1 (203-243)||(11407251-11407291)
chr1 (202-238)||(18227035-18227071)
chr1 (203-243)||(43575702-43575742)
[»] chr4 (17 HSPs)
chr4 (1-134)||(26393309-26393442)
chr4 (7-138)||(21526942-21527073)
chr4 (7-135)||(36254120-36254248)
chr4 (96-140)||(6057005-6057049)
chr4 (92-137)||(20143280-20143325)
chr4 (84-144)||(36253481-36253541)
chr4 (92-139)||(21837388-21837435)
chr4 (96-139)||(24666128-24666171)
chr4 (96-138)||(14527582-14527624)
chr4 (206-243)||(1580082-1580119)
chr4 (101-138)||(34941502-34941539)
chr4 (99-140)||(42792773-42792814)
chr4 (202-243)||(46196734-46196775)
chr4 (100-145)||(51386449-51386494)
chr4 (202-234)||(143496-143528)
chr4 (203-243)||(9779237-9779277)
chr4 (203-243)||(47045203-47045243)
[»] chr3 (25 HSPs)
chr3 (4-140)||(4706275-4706411)
chr3 (6-138)||(33761970-33762103)
chr3 (92-153)||(4706958-4707019)
chr3 (92-139)||(20807936-20807983)
chr3 (92-138)||(20808609-20808655)
chr3 (92-141)||(33762690-33762739)
chr3 (296-375)||(43410163-43410242)
chr3 (96-143)||(53343862-53343909)
chr3 (202-243)||(5492542-5492583)
chr3 (96-137)||(54308454-54308495)
chr3 (96-138)||(15287567-15287609)
chr3 (168-243)||(22102393-22102468)
chr3 (168-243)||(22177341-22177416)
chr3 (94-136)||(38557235-38557277)
chr3 (374-412)||(43410363-43410401)
chr3 (96-138)||(46883764-46883806)
chr3 (96-138)||(47571196-47571238)
chr3 (96-138)||(49349676-49349718)
chr3 (96-138)||(49350276-49350318)
chr3 (96-137)||(9830573-9830614)
chr3 (202-243)||(12565550-12565591)
chr3 (202-243)||(13259949-13259990)
chr3 (300-365)||(38233121-38233186)
chr3 (203-247)||(43566696-43566740)
chr3 (99-139)||(53243425-53243465)
[»] chr7 (31 HSPs)
chr7 (5-138)||(1512475-1512608)
chr7 (299-375)||(39947238-39947318)
chr7 (275-366)||(44970100-44970190)
chr7 (296-365)||(17756619-17756687)
chr7 (264-365)||(44945022-44945120)
chr7 (96-138)||(46491694-46491736)
chr7 (92-138)||(3314955-3315001)
chr7 (168-243)||(4998162-4998237)
chr7 (96-142)||(42818559-42818605)
chr7 (96-133)||(37783487-37783524)
chr7 (96-139)||(17114144-17114187)
chr7 (202-245)||(21766265-21766308)
chr7 (202-245)||(32297964-32298007)
chr7 (96-138)||(767136-767178)
chr7 (92-134)||(1511851-1511893)
chr7 (96-138)||(2403447-2403489)
chr7 (168-243)||(19371698-19371773)
chr7 (96-138)||(41965783-41965825)
chr7 (96-141)||(767972-768017)
chr7 (96-141)||(18591806-18591851)
chr7 (96-141)||(18619834-18619879)
chr7 (96-141)||(18632891-18632936)
chr7 (96-141)||(18645603-18645648)
chr7 (96-141)||(18648188-18648233)
chr7 (96-141)||(18652888-18652933)
chr7 (202-243)||(23050840-23050881)
chr7 (96-133)||(36611556-36611593)
chr7 (296-328)||(15234902-15234934)
chr7 (203-243)||(19491928-19491968)
chr7 (92-136)||(22297016-22297060)
chr7 (92-144)||(34808991-34809043)
[»] chr6 (6 HSPs)
chr6 (275-372)||(26229229-26229324)
chr6 (299-358)||(10172562-10172621)
chr6 (92-138)||(13084881-13084927)
chr6 (202-243)||(2315848-2315889)
chr6 (96-140)||(16719000-16719044)
chr6 (203-243)||(26253008-26253048)
[»] chr5 (20 HSPs)
chr5 (264-375)||(31736842-31736951)
chr5 (99-145)||(27345928-27345974)
chr5 (96-137)||(15561411-15561452)
chr5 (96-142)||(23253492-23253538)
chr5 (202-243)||(19650684-19650725)
chr5 (275-319)||(4428883-4428926)
chr5 (96-140)||(40372166-40372210)
chr5 (202-245)||(1611522-1611565)
chr5 (202-245)||(23270432-23270475)
chr5 (96-139)||(39937912-39937955)
chr5 (203-245)||(1612042-1612084)
chr5 (96-138)||(2029053-2029095)
chr5 (96-138)||(24565573-24565615)
chr5 (96-138)||(24606609-24606651)
chr5 (92-138)||(29595596-29595642)
chr5 (202-243)||(832156-832197)
chr5 (202-243)||(5025629-5025670)
chr5 (202-247)||(25782056-25782101)
chr5 (103-143)||(2028332-2028372)
chr5 (296-328)||(17549199-17549231)
[»] chr2 (12 HSPs)
chr2 (18-139)||(29388282-29388405)
chr2 (72-138)||(29388930-29388996)
chr2 (96-138)||(10173936-10173978)
chr2 (102-139)||(127032-127069)
chr2 (92-137)||(34595936-34595981)
chr2 (96-138)||(127741-127783)
chr2 (96-138)||(9157015-9157057)
chr2 (168-243)||(10553151-10553226)
chr2 (96-138)||(20606927-20606969)
chr2 (96-140)||(18537499-18537543)
chr2 (99-143)||(20606281-20606325)
chr2 (203-243)||(33676785-33676825)
[»] chr8 (22 HSPs)
chr8 (96-138)||(4402293-4402335)
chr8 (92-138)||(16911048-16911094)
chr8 (202-247)||(8512158-8512203)
chr8 (202-247)||(8517968-8518013)
chr8 (202-236)||(3739559-3739593)
chr8 (96-138)||(9277196-9277238)
chr8 (96-138)||(9929200-9929242)
chr8 (168-243)||(15898742-15898817)
chr8 (96-138)||(22632974-22633016)
chr8 (96-138)||(26847097-26847139)
chr8 (100-138)||(31713878-31713916)
chr8 (96-142)||(40599883-40599929)
chr8 (96-138)||(42094009-42094051)
chr8 (202-243)||(1526183-1526224)
chr8 (202-247)||(8514198-8514243)
chr8 (202-243)||(15872121-15872162)
chr8 (202-243)||(15919605-15919646)
chr8 (96-137)||(22632323-22632364)
chr8 (202-243)||(29684208-29684249)
chr8 (203-247)||(8515890-8515934)
chr8 (203-247)||(8519673-8519717)
chr8 (203-243)||(24688601-24688641)
[»] scaffold0013 (1 HSPs)
scaffold0013 (202-243)||(41604-41645)
[»] scaffold0445 (1 HSPs)
scaffold0445 (203-243)||(4804-4844)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 409 - 588
Target Start/End: Original strand, 6058441 - 6058620
Alignment:
Q  409 tttccaatttttgctatcaagcaactcaaatgtacattacgattatatgcttctttttcaatgttctatgttctttttatggttcgtgacacacctccca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6058441 tttccaatttttgctatcaagcaactcaaatgtacattacgattatatgcttctttttcaatgttttatgttctttttatggttcgtgacacacctccca 6058540  T
Q  509 ttgaatgttaataactttaagttcaatttcagggtccaaatatgattttaccttcttacatgagagaaaacacatataac 588  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6058541 ttgaatgttaataacttttagttcaatttcagggtccaagtatgattttaccttcttacatgagagaaaacacatataac 6058620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 299 - 371
Target Start/End: Original strand, 1787371 - 1787443
Alignment:
Q  299 tatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggtccctcagt 371  Q
    ||||||||||||||||||||||||||||||  | |||||||||||||||| |||||||||||| |||||||||    
T  1787371 tatataaatttcatattatgcatgatatttccattaatgcattgtcgttgaagtggttatgcgctccctcagt 1787443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 24847845 - 24847783
Alignment:
Q  76 aacggtcgatttaaacggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  24847845 aacggtcaatttaaatggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 24848420 - 24848474
Alignment:
Q  84 atttaaacggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  24848420 atttaaatggtacaccggtgagggacttaatagaaccctcaccctagaatccacc 24848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 16449597 - 16449554
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacca 16449554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 16459171 - 16459128
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    ||||||||||||||||| | ||||||||||||||||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacca 16459128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 26240877 - 26240919
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  26240877 caccggtgagggacttaattgaaccctcaccctagaatccacc 26240919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 36565818 - 36565775
Alignment:
Q  275 gtgccactgcaccgcccctgattttatataaatttcatattatgc 319  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  36565818 gtgccactgcacc-ccccagattttatataaatttcatattatgc 36565775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 26240156 - 26240114
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  26240156 caccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 32305568 - 32305526
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtataga 245  Q
    |||||||| |||| ||||||||||||||||||||| |||||||    
T  32305568 ttgtttaatggtataattgggataatgaaaaagtaagtataga 32305526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 1099930 - 1099893
Alignment:
Q  99 cggtgagggacttagtagaaccctcaccctagaatcca 136  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  1099930 cggtgagggacttaatagaactctcaccctagaatcca 1099893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 13303991 - 13303925
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaa 234  Q
    ||||||||||  |||||| ||||||||       |||||||||||||| ||||||||||||||||||    
T  13303991 aatgacaccaacaacaatctttattatagaaaaagttgtttaaaggtataattgggataatgaaaaa 13303925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 48420003 - 48419962
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  48420003 gttgtttaatggtataattgggataatgaaaaagtaagtata 48419962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 4198230 - 4198273
Alignment:
Q  275 gtgccactgcaccgcccctgattttatataaatttcatattatgc 319  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||    
T  4198230 gtgccactgcacc-ccccaggttttatataaatttcatattatgc 4198273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 11407291 - 11407251
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||| |||| ||||||||||||||||||||| |||||    
T  11407291 ttgtttaagggtataattgggataatgaaaaagtaagtata 11407251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 18227035 - 18227071
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtat 238  Q
    |||||||||||||| ||||| ||||||||||||||||    
T  18227035 gttgtttaaaggtataattgagataatgaaaaagtat 18227071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 43575702 - 43575742
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||| |||| ||||||||||||||||||||| |||||    
T  43575702 ttgtttaagggtataattgggataatgaaaaagtaagtata 43575742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 26393309 - 26393442
Alignment:
Q  1 tggttgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtatccnnnnnnnatccaacggtcgatttaaacggtacaccg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||| ||||||| |||||||||||||||||    
T  26393309 tggttgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatctaacggtcaatttaaacggtacaccg 26393408  T
Q  101 gtgagggacttagtagaaccctcaccctagaatc 134  Q
    |||||||||||| |||| ||||||||||||||||    
T  26393409 gtgagggacttaatagagccctcaccctagaatc 26393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 21526942 - 21527073
Alignment:
Q  7 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtatccnnnnnnnatccaacggtcgatttaaacggtacaccggtgagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||| ||| ||| |||||||||||||| ||||||||    
T  21526942 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatctaacagtcaatttaaacggtacaacggtgagg 21527041  T
Q  107 gacttagtagaaccctcaccctagaatccacc 138  Q
    |||||| |||| ||||||||||||||||||||    
T  21527042 gacttaatagagccctcaccctagaatccacc 21527073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 36254120 - 36254248
Alignment:
Q  7 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtatccnnnnnnnatccaacggtcgatttaaacggtacaccggtgagg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||| |||| || |||||||||||||||||||||||    
T  36254120 taaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtaccctttttttatctaacgatcaatttaaacggtacaccggtgagg 36254219  T
Q  107 gacttagtagaaccctcaccctagaatcc 135  Q
     ||||| ||||  ||||||||||||||||    
T  36254220 aacttaatagagtcctcaccctagaatcc 36254248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 6057005 - 6057049
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaa 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  6057005 caccggtgagggacttagtagaaccctcaccctagaatccaccaa 6057049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 20143325 - 20143280
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccac 137  Q
    ||||||||||||||||||||||| || |||||||||||||||||||    
T  20143325 ggtacaccggtgagggacttagttgagccctcaccctagaatccac 20143280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 36253541 - 36253481
Alignment:
Q  84 atttaaacggtacaccggtgagggacttagtagaaccctcaccctagaatccaccaaaaat 144  Q
    ||||||| |||||| |||||||||||||| ||||||||||||| ||||||| |||| ||||    
T  36253541 atttaaatggtacatcggtgagggacttaatagaaccctcaccttagaatctaccacaaat 36253481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 21837435 - 21837388
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    |||| |||||||||||||||||| | ||||||||||||||||||||||    
T  21837435 ggtaaaccggtgagggacttagttggaccctcaccctagaatccacca 21837388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 24666171 - 24666128
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    ||||||||||||||||| | || |||||||||||||||||||||    
T  24666171 caccggtgagggacttaattgatccctcaccctagaatccacca 24666128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 14527582 - 14527624
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  14527582 caccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 1580082 - 1580119
Alignment:
Q  206 tttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  1580082 tttaaaggtataattgggataatgaaaaagtaagtata 1580119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 34941539 - 34941502
Alignment:
Q  101 gtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    |||||||||||| | |||||||||||||||||||||||    
T  34941539 gtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 42792814 - 42792773
Alignment:
Q  99 cggtgagggacttagtagaaccctcaccctagaatccaccaa 140  Q
    |||||||||||||| | | |||||||||||||||||||||||    
T  42792814 cggtgagggacttaattggaccctcaccctagaatccaccaa 42792773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 46196775 - 46196734
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||| | ||||||||||||||||||||| |||||    
T  46196775 gttgtttaaaggcataattgggataatgaaaaagtaagtata 46196734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Complemental strand, 51386494 - 51386449
Alignment:
Q  100 ggtgagggacttagtagaaccctcaccctagaatccaccaaaaata 145  Q
    ||||||||||||| | |||||||||||||| ||||||||| |||||    
T  51386494 ggtgagggacttaattgaaccctcaccctaaaatccaccataaata 51386449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 143496 - 143528
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaa 234  Q
    |||||||||||||| ||||||||||||||||||    
T  143496 gttgtttaaaggtataattgggataatgaaaaa 143528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 9779237 - 9779277
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||| |||| ||||||||||||||||||||| |||||    
T  9779237 ttgtttaagggtataattgggataatgaaaaagtaagtata 9779277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 47045203 - 47045243
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||| || ||||||||||||||||||||| |||||    
T  47045203 ttgtttaaagatataattgggataatgaaaaagtaagtata 47045243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 4706411 - 4706275
Alignment:
Q  4 ttgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtatccnnnnnnnatccaacggtcgatttaaacggtacaccggtg 103  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||       ||| ||||||| ||||||||||||||||||||    
T  4706411 ttgtaaagggggagagaaaaagcataattcagtggtttgtcactaaagatatcatgtaccctttttttatctaacggtcaatttaaacggtacaccggtg 4706312  T
Q  104 agggacttagtagaaccctcaccctagaatccaccaa 140  Q
    ||| ||||| |||| ||||||||||| ||||||||||    
T  4706311 aggtacttaatagagccctcaccctaaaatccaccaa 4706275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 6 - 138
Target Start/End: Complemental strand, 33762103 - 33761970
Alignment:
Q  6 gtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtatcc-nnnnnnnatccaacggtcgatttaaacggtacaccggtga 104  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||        ||| ||||||| |||||||||||||||||||||    
T  33762103 gtaaagggggagagaaaaagcataatccagtggtttgtcattaaagatatcatgtacccttttttttatctaacggtcaatttaaacggtacaccggtga 33762004  T
Q  105 gggacttagtagaaccctcaccctagaatccacc 138  Q
    || ||||| |||| ||||||||||||||||||||    
T  33762003 ggaacttaatagagccctcaccctagaatccacc 33761970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 4706958 - 4707019
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccaccaaaaatataatctaa 153  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  4706958 ggtacaccggtgagggacttaatagaaccctcaccctagaatccaccaaaaatgttatctaa 4707019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 20807983 - 20807936
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  20807983 ggtacaccggtgagggacttaattgaaccctcaccctagaatccacca 20807936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 20808609 - 20808655
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  20808609 ggtacaccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 33762690 - 33762739
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| ||||||    
T  33762690 ggtacaccggtgagggacttaatagaaccctcaccttagaatctaccaaa 33762739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 296 - 375
Target Start/End: Original strand, 43410163 - 43410242
Alignment:
Q  296 ttttatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggtccctcagtgtat 375  Q
    |||||| |||||||||||||||||||| |||||| ||| || | ||||||||| || |||||| |||||| ||| |||||    
T  43410163 ttttatgtaaatttcatattatgcatggtattttaactgatacgttgtcgttggagcggttatacggtccatcaatgtat 43410242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 53343862 - 53343909
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaaaa 143  Q
    ||||||||||||||||  | ||||||||||||||||||||||||||||    
T  53343862 caccggtgagggacttgtttgaaccctcaccctagaatccaccaaaaa 53343909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 5492542 - 5492583
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  5492542 gttgtttaaaggtataattgggataatgaaaaagtaagtata 5492583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 54308495 - 54308454
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccac 137  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  54308495 caccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 15287609 - 15287567
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  15287609 caccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 22102468 - 22102393
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||  |||||| ||||||||       ||||||||| |||| ||||||||||||||||||||| |||||    
T  22102468 aatgacaccaacaacaatctttattatggaaaaagttgtttaagggtataattgggataatgaaaaagtaagtata 22102393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 22177416 - 22177341
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||  |||||| ||||||||       ||||||||| |||| ||||||||||||||||||||| |||||    
T  22177416 aatgacaccaacaacaatctttattatggaaaaagttgtttaagggtataattgggataatgaaaaagtaagtata 22177341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 38557235 - 38557277
Alignment:
Q  94 tacaccggtgagggacttagtagaaccctcaccctagaatcca 136  Q
    ||||||||||||||||||| |||| ||||||||||| ||||||    
T  38557235 tacaccggtgagggacttaatagagccctcaccctaaaatcca 38557277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 374 - 412
Target Start/End: Original strand, 43410363 - 43410401
Alignment:
Q  374 atcaggcaatattaccaccacatcagtttacaatgtttc 412  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  43410363 atcaagcaatattaccaccgcatcagtttacaatgtttc 43410401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 46883806 - 46883764
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| |||| |||||||||||||| |||||    
T  46883806 caccggtgagggacttaatagagccctcaccctagaagccacc 46883764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 47571238 - 47571196
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 49350276 - 49350318
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    |||||| |||||||||| | |||||||||||||||||||||||    
T  49350276 caccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 9830614 - 9830573
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccac 137  Q
    ||||||||||||||||| | |||||||||||| |||||||||    
T  9830614 caccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 12565550 - 12565591
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  12565550 gttgtttaaaggtataattggaataatgaaaaagtaagtata 12565591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 13259949 - 13259990
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| |||||| |||||||||||||| |||||    
T  13259949 gttgtttaaaggtataattggaataatgaaaaagtaagtata 13259990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 365
Target Start/End: Complemental strand, 38233186 - 38233121
Alignment:
Q  300 atataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggtcc 365  Q
    |||||||||||||||||| ||||||| ||  ||| || | || ||||||||| |||||||||||||    
T  38233186 atataaatttcatattatacatgatacttcaactgatacgttctcgttgtagcggttatgcggtcc 38233121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 43566696 - 43566740
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    ||||||||| ||| |||| |||||||||||||||| |||||||||    
T  43566696 ttgtttaaacgtataattaggataatgaaaaagtaagtatagaca 43566740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 53243425 - 53243465
Alignment:
Q  99 cggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    |||||||||| ||||| ||| ||||||||||||||||||||    
T  53243425 cggtgagggatttagttgaatcctcaccctagaatccacca 53243465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 8e-38; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 1512475 - 1512608
Alignment:
Q  5 tgtaaagggggagagaaaaagcataatccagtggtttgtcactaaagatatcatgtatccnnnnnnnatccaacggtcgatttaaacggtacaccggtga 104  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||       ||| ||||||| |||||||||||||||||||||    
T  1512475 tgtaaagggggagagaaaaagcataatccagtggtttgtcattaaagatattatgtatcctttttttatctaacggtcaatttaaacggtacaccggtga 1512574  T
Q  105 gggacttagtagaaccctcaccctagaatccacc 138  Q
    || ||||| |||| | ||||||||||||||||||    
T  1512575 ggaacttaatagagctctcaccctagaatccacc 1512608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 299 - 375
Target Start/End: Original strand, 39947238 - 39947318
Alignment:
Q  299 tatataaatttcatattatgcatgatatttttactaat----gcattgtcgttgtagtggttatgcggtccctcagtgtat 375  Q
    ||||||||||||||||||||||||||  ||||||||||    |||||||||||| || |||||||||||||||||||||||    
T  39947238 tatataaatttcatattatgcatgattgttttactaattaatgcattgtcgttgcagcggttatgcggtccctcagtgtat 39947318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 275 - 366
Target Start/End: Original strand, 44970100 - 44970190
Alignment:
Q  275 gtgccactgcaccgcccctgattttatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggtccc 366  Q
    ||||||||||||| |||| | || ||||||||||||||||||||||||| ||||  |||||||||||| | ||| |||||||||||| ||||    
T  44970100 gtgccactgcacc-ccccagtttatatataaatttcatattatgcatgacatttcaactaatgcattgccattgaagtggttatgcgctccc 44970190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 17756619 - 17756687
Alignment:
Q  296 ttttatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggtcc 365  Q
    |||||||||||||||||||||||| ||||||||| || |||||  ||| |||||||||||||||||||||    
T  17756619 ttttatataaatttcatattatgcttgatattttaacaaatgc-gtgttgttgtagtggttatgcggtcc 17756687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 44945022 - 44945120
Alignment:
Q  264 gagacccgcatgtgccactgcaccgcccctgattttatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggt 363  Q
    ||||||| || |||||||| ||||  ||| | |||||||||||||||||||||||| ||||||||| |  |||||| ||| |||| ||||||||||||||    
T  44945022 gagacccccaggtgccactccacc--cccagtttttatataaatttcatattatgcttgatattttaagaaatgca-tgttgttgcagtggttatgcggt 44945118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 46491694 - 46491736
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  46491694 caccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 3315001 - 3314955
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||||    
T  3315001 ggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 4998237 - 4998162
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||| |||||||||||||||       ||||||||| | || ||||||||||||||||||||| |||||    
T  4998237 aatgacaccagcaacaatttttattatagaaaaagttgtttaaggatataattgggataatgaaaaagtaagtata 4998162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 42818559 - 42818605
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaaa 142  Q
    ||||||||||||||||| | |||||||||||||||||| ||||||||    
T  42818559 caccggtgagggacttaattgaaccctcaccctagaattcaccaaaa 42818605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 37783487 - 37783524
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaat 133  Q
    |||||||||||||||||||||| |||||||||||||||    
T  37783487 caccggtgagggacttagtagagccctcaccctagaat 37783524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 17114187 - 17114144
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||    
T  17114187 caccgatgagggacttaattgaaccctcaccctagaatccacca 17114144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 21766265 - 21766308
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtataga 245  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  21766265 gttgtttaagggtataattgggataatgaaaaagtaagtataga 21766308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 32297964 - 32298007
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtataga 245  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||    
T  32297964 gttgtttaaaggtataattgagataatgaaaaagtaagtataga 32298007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 767178 - 767136
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  767178 caccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 134
Target Start/End: Complemental strand, 1511893 - 1511851
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatc 134  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||    
T  1511893 ggtacaccggtgagggacttaatagaaccatcaccttagaatc 1511851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 2403447 - 2403489
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||    
T  2403447 caccggtgagggacttagttgaaccctcatcctagaattcacc 2403489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 19371773 - 19371698
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||  |||||| ||||||||       ||||||||| |||| ||||||||||||||||||||| |||||    
T  19371773 aatgacaccaacaacaatctttattatagaaaaagttgtttaagggtataattgggataatgaaaaagtaagtata 19371698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 41965783 - 41965825
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  41965783 caccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 767972 - 768017
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||||||| | | |||||||||||| |||||||||||    
T  767972 caccggtgagggacttaattggaccctcaccctaaaatccaccaaa 768017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Original strand, 18591806 - 18591851
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  18591806 caccggtgagggatttactaggaccttcaccctagaatccaccaaa 18591851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 18619879 - 18619834
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  18619879 caccggtgagggatttactaggaccttcaccctagaatccaccaaa 18619834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 18632936 - 18632891
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  18632936 caccggtgagggatttactaggaccttcaccctagaatccaccaaa 18632891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 18645648 - 18645603
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  18645648 caccggtgagggatttactaggaccttcaccctagaatccaccaaa 18645603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 18648233 - 18648188
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  18648233 caccggtgagggatttactaggaccttcaccctagaatccaccaaa 18648188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 18652933 - 18652888
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaa 141  Q
    ||||||||||||| ||| ||| ||| ||||||||||||||||||||    
T  18652933 caccggtgagggatttaataggaccttcaccctagaatccaccaaa 18652888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 23050881 - 23050840
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  23050881 gttgtttaagggtataattgggataatgaaaaagtaagtata 23050840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 36611593 - 36611556
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaat 133  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  36611593 caccggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 15234934 - 15234902
Alignment:
Q  296 ttttatataaatttcatattatgcatgatattt 328  Q
    |||||||||||||||||||||| ||||||||||    
T  15234934 ttttatataaatttcatattatacatgatattt 15234902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 19491968 - 19491928
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  19491968 ttgtttaaaggtataattgagataatgaaaaagtaagtata 19491928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 22297060 - 22297016
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatcca 136  Q
    |||||| |||||||||||||||| | || ||||||||||||||||    
T  22297060 ggtacatcggtgagggacttagttggactctcaccctagaatcca 22297016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 34808991 - 34809043
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccaccaaaaat 144  Q
    ||||||||| ||| ||||||| | |||||||||| |||||||||||| |||||    
T  34808991 ggtacaccgatgaaggacttaattgaaccctcactctagaatccacctaaaat 34809043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 372
Target Start/End: Original strand, 26229229 - 26229324
Alignment:
Q  275 gtgccactgcaccgcccctgattttatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggtccctcagtg 372  Q
    |||||||||||||  ||| | || |||||||||||||||||||||||| |||||| |||||||||||| ||||| ||||||||| || ||||| ||||    
T  26229229 gtgccactgcacc--cccagtttatatataaatttcatattatgcatgttattttcactaatgcattgccgttgaagtggttatccgctcccttagtg 26229324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 10172562 - 10172621
Alignment:
Q  299 tatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttat 358  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||||| |||||||||    
T  10172562 tatataaattttatattatgcatgatatttctattaatgcattgtcgttgaagtggttat 10172621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 13084881 - 13084927
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||||    
T  13084881 ggtacaccggtgagagacttagttgaaccctcaccctagaattcacc 13084927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 2315848 - 2315889
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| |||||||||||||| |||||| |||||    
T  2315848 gttgtttaaaggtataattgggataatgagaaagtaagtata 2315889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 16719000 - 16719044
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaa 140  Q
    ||||||||||||||||| | || || |||||||||||||||||||    
T  16719000 caccggtgagggacttaattgatccgtcaccctagaatccaccaa 16719044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 26253008 - 26253048
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||| |||| |||||||||| ||||||||||||||||    
T  26253008 ttgtttaagggtataattgggatagtgaaaaagtatgtata 26253048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 264 - 375
Target Start/End: Complemental strand, 31736951 - 31736842
Alignment:
Q  264 gagacccgcatgtgccactgcaccgcccctgattttatataaatttcatattatgcatgatatttttactaatgcattgtcgttgtagtggttatgcggt 363  Q
    ||||||| || |||||||||||||  ||| | |||||||||||||||||||||||  || |||||  || ||||  ||||||||| ||||||||||| ||    
T  31736951 gagacccccaggtgccactgcacc--cccagtttttatataaatttcatattatgattggtatttcaacaaatgtgttgtcgttgaagtggttatgcagt 31736854  T
Q  364 ccctcagtgtat 375  Q
    |||||| |||||    
T  31736853 ccctcaatgtat 31736842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 27345928 - 27345974
Alignment:
Q  99 cggtgagggacttagtagaaccctcaccctagaatccaccaaaaata 145  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||    
T  27345928 cggtgagggacttaattgaaccctcaccctagaatccaccaaaaata 27345974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 15561452 - 15561411
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccac 137  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  15561452 caccggtgagggacttagtagagccctcaccctagaatccac 15561411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 23253492 - 23253538
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaaa 142  Q
    ||||||||||||||||| | | |||||||||||||||||||||||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatccaccaaaa 23253538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 19650725 - 19650684
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  19650725 gttgtttaaaggtataattgggataatgaaaaagtaagtata 19650684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 319
Target Start/End: Complemental strand, 4428926 - 4428883
Alignment:
Q  275 gtgccactgcaccgcccctgattttatataaatttcatattatgc 319  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||    
T  4428926 gtgccactgcacc-ccccagattttatataaatttcatattatgc 4428883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 40372166 - 40372210
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaa 140  Q
    ||||||||||| ||||| | |||||||||||||||||||||||||    
T  40372166 caccggtgaggaacttaattgaaccctcaccctagaatccaccaa 40372210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 1611565 - 1611522
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtataga 245  Q
    |||||||||||||| |||||||||||| |||||||| |||||||    
T  1611565 gttgtttaaaggtataattgggataataaaaaagtaagtataga 1611522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 202 - 245
Target Start/End: Complemental strand, 23270475 - 23270432
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtataga 245  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  23270475 gttgtttaagggtataattgggataatgaaaaagtaagtataga 23270432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 39937912 - 39937955
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacca 139  Q
    |||||||||||||||||   ||||||||||||||||||||||||    
T  39937912 caccggtgagggacttaactgaaccctcaccctagaatccacca 39937955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 1612042 - 1612084
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtataga 245  Q
    |||||||| |||| ||||||||||||||||||||| |||||||    
T  1612042 ttgtttaagggtataattgggataatgaaaaagtaagtataga 1612084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 2029053 - 2029095
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccacc 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 24565615 - 24565573
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||| ||| | |||||||||||||||||||||||    
T  24565615 caccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 24606651 - 24606609
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||| ||| | |||||||||||||||||||||||    
T  24606651 caccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 29595596 - 29595642
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||| ||||||||||||| | |||||||||| ||||||||||||    
T  29595596 ggtacactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 832197 - 832156
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| |||||||||||| |||||||| |||||    
T  832197 gttgtttaaaggtataattgggataataaaaaagtaagtata 832156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 5025670 - 5025629
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  5025670 gttgtttaagggtataattgggataatgaaaaagtaagtata 5025629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 25782056 - 25782101
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    ||||||||| |||| ||||||||| ||||||||||| |||||||||    
T  25782056 gttgtttaagggtataattgggatgatgaaaaagtaagtatagaca 25782101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 2028372 - 2028332
Alignment:
Q  103 gagggacttagtagaaccctcaccctagaatccaccaaaaa 143  Q
    |||||||||||| |||||||||||||| |||||||| ||||    
T  2028372 gagggacttagttgaaccctcaccctaaaatccacctaaaa 2028332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 17549199 - 17549231
Alignment:
Q  296 ttttatataaatttcatattatgcatgatattt 328  Q
    |||||||||||||||||||||| ||||||||||    
T  17549199 ttttatataaatttcatattatacatgatattt 17549231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 29388405 - 29388282
Alignment:
Q  18 agaaaaagcataatccagtgg--tttgtcactaaagatatcatgtatccnnnnnnnatccaacggtcgatttaaacggtacaccggtgagggacttagta 115  Q
    |||||||||||||||| |||   ||||| |||||||||||||||||  |       ||| ||||||| ||||||| |||||| |||||| ||||||| ||    
T  29388405 agaaaaagcataatcctgtgtgatttgtgactaaagatatcatgtacacttttttcatctaacggtcaatttaaatggtacatcggtgaaggacttaata 29388306  T
Q  116 gaaccctcaccctagaatccacca 139  Q
    || ||||||| |||||||||||||    
T  29388305 gagccctcactctagaatccacca 29388282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 29388930 - 29388996
Alignment:
Q  72 atccaacggtcgatttaaacggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||| | ||||||| |||||| |||||||||||||| |||| ||||||||||| ||||||||    
T  29388930 atccaacggccaatttaaatggtacatcggtgagggacttaatagagccctcaccctaaaatccacc 29388996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 10173978 - 10173936
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  10173978 caccggtgagggacttaacagaaccctcaccctagaatccacc 10173936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 127069 - 127032
Alignment:
Q  102 tgagggacttagtagaaccctcaccctagaatccacca 139  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  127069 tgagggacttagttgaaccctcaccctagaatccacca 127032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 34595936 - 34595981
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccac 137  Q
    ||||||||||||||||| ||||| |||||||||| |||||||||||    
T  34595936 ggtacaccggtgagggatttagttgaaccctcactctagaatccac 34595981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 127741 - 127783
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||| ||||||| | |||||||||||||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacc 127783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 9157057 - 9157015
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||    
T  9157057 caccggtgagggatttaatagaaccctcgccctagaatccacc 9157015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 10553226 - 10553151
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||  |||||||||||||||       ||||||||| |||| ||||||||||| ||||||||| |||||    
T  10553226 aatgacaccaacaacaatttttattatagaaaacgttgtttaagggtataattgggataacgaaaaagtaagtata 10553151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 20606927 - 20606969
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | |||||||||||||||||| ||||    
T  20606927 caccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 18537499 - 18537543
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaa 140  Q
    ||||||||||||||||| | ||||||||| | |||||||||||||    
T  18537499 caccggtgagggacttaattgaaccctcatcatagaatccaccaa 18537543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 20606325 - 20606281
Alignment:
Q  99 cggtgagggacttagtagaaccctcaccctagaatccaccaaaaa 143  Q
    |||||||||||||| |  ||||||||||||| |||||||||||||    
T  20606325 cggtgagggacttaattaaaccctcaccctaaaatccaccaaaaa 20606281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 33676785 - 33676825
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||| |||| ||||||||||||||||||||| |||||    
T  33676785 ttgtttaagggtataattgggataatgaaaaagtaagtata 33676825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 4402293 - 4402335
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  4402293 caccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 16911048 - 16911094
Alignment:
Q  92 ggtacaccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||||||| | || ||||||||||||||||||||    
T  16911048 ggtacaccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 8512158 - 8512203
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  8512158 gttgtttaaaggtataattgagataatgaaaaagtaagtatagaca 8512203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 8517968 - 8518013
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    |||||||||||||| ||||| ||||||||||||||| |||||||||    
T  8517968 gttgtttaaaggtataattgagataatgaaaaagtaagtatagaca 8518013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 236
Target Start/End: Complemental strand, 3739593 - 3739559
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagt 236  Q
    |||||||||||||| ||||||||||||||||||||    
T  3739593 gttgtttaaaggtataattgggataatgaaaaagt 3739559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 9277238 - 9277196
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||| ||||||||||  |||||||||||||||||||||||||    
T  9277238 caccgatgagggacttgttagaaccctcaccctagaatccacc 9277196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 9929242 - 9929200
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    |||||||||||||||||||||| |||||||| |||||| ||||    
T  9929242 caccggtgagggacttagtagagccctcaccttagaattcacc 9929200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 15898817 - 15898742
Alignment:
Q  168 aatgacaccagtaacaatttttattatnnnnnnngttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||  |||||||||||||||       ||||||||| |||| |||||||||| | ||||||||||||||    
T  15898817 aatgacaccaacaacaatttttattataaaaaaagttgtttaagggtataattgggatagtaaaaaagtatgtata 15898742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 22632974 - 22633016
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  22632974 caccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 26847139 - 26847097
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | | |||||||||||||||||||||    
T  26847139 caccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 31713878 - 31713916
Alignment:
Q  100 ggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||  |||||||||||||||||||||||||    
T  31713878 ggtgagggacttgttagaaccctcaccctagaatccacc 31713916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 40599929 - 40599883
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccaccaaaa 142  Q
    ||||||||||||||||  | ||||||||| |||||||||||||||||    
T  40599929 caccggtgagggacttgtttgaaccctcatcctagaatccaccaaaa 40599883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 96 - 138
Target Start/End: Complemental strand, 42094051 - 42094009
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccacc 138  Q
    ||||||||||||||||| | || ||||||||||||||||||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 1526183 - 1526224
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  1526183 gttgtttaagggtataattgggataatgaaaaagtaagtata 1526224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 8514198 - 8514243
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    |||||||||||||| ||||| |||||| |||||||| |||||||||    
T  8514198 gttgtttaaaggtataattgagataataaaaaagtaagtatagaca 8514243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 15872121 - 15872162
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||||||| |||||||||| |||||||||| |||||    
T  15872121 gttgtttaaaggtataattgggatagtgaaaaagtaagtata 15872162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 15919605 - 15919646
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  15919605 gttgtttaagggtataattgggataatgaaaaagtaagtata 15919646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 22632364 - 22632323
Alignment:
Q  96 caccggtgagggacttagtagaaccctcaccctagaatccac 137  Q
    ||||||||||||||||| | || |||||||||||||||||||    
T  22632364 caccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Complemental strand, 29684249 - 29684208
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    |||||||||| ||| ||||||||||||||||||||| |||||    
T  29684249 gttgtttaaaagtataattgggataatgaaaaagtaagtata 29684208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 8515890 - 8515934
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    ||||||||||||| ||||  ||||||||||||||| |||||||||    
T  8515890 ttgtttaaaggtataatttagataatgaaaaagtaagtatagaca 8515934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 8519673 - 8519717
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtatagaca 247  Q
    ||||||||||||| ||||  ||||||||||||||| |||||||||    
T  8519673 ttgtttaaaggtataatttagataatgaaaaagtaagtatagaca 8519717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 24688641 - 24688601
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  24688641 ttgtttaaaggtataattgagataatgaaaaagtaagtata 24688601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 243
Target Start/End: Original strand, 41604 - 41645
Alignment:
Q  202 gttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  41604 gttgtttaagggtataattgggataatgaaaaagtaagtata 41645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Complemental strand, 4844 - 4804
Alignment:
Q  203 ttgtttaaaggtaaaattgggataatgaaaaagtatgtata 243  Q
    ||||||||| ||| ||||||||||||||||||||| |||||    
T  4844 ttgtttaaatgtataattgggataatgaaaaagtaagtata 4804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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