View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_high_7 (Length: 513)
Name: NF11734_high_7
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 281 - 490
Target Start/End: Original strand, 24624061 - 24624270
Alignment:
| Q |
281 |
tggtactcaccccatgataacaggctcataaatcagaaaatagcaaattatttcctcatcagaagtatctaagacttcttgtatgtccaaggtgaaaaga |
380 |
Q |
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| T |
24624061 |
tggtacttaccccatgataacaggctcataaatcagaaaatagcaaattatttcctcatcagaagtatctaagacttcttgtatgtccaaggtgaaaaga |
24624160 |
T |
|
| Q |
381 |
attaatgcagctagttcttcaagggcacgtgcacaagaaccattttatcctttaaaattcgaaggtacttaccaacaagaacaatgcagagagttggtgg |
480 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
24624161 |
attaatgcagctagttcttcaagggcacgcgcacaagaaccattttatcctttaaaattcaaaggtacttaccaacaagaacaatgcagaacgttggtgg |
24624260 |
T |
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| Q |
481 |
agcgggaaat |
490 |
Q |
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|||||||||| |
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| T |
24624261 |
agcgggaaat |
24624270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 24623839 - 24624039
Alignment:
| Q |
85 |
taatgcaacatattagaactagcatagtgtactagtgatatatagcagggaattaaatataaccaaaaagaagnnnnnnnntgaagaaaataatctatca |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24623839 |
taatgcaacatattagaactagcatagtgtactagtgatatatagcagggaattaaatataaccaaaaagaagaaaaaaaatgaagaaaataatctatca |
24623938 |
T |
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| Q |
185 |
aattctgaagtacgcgctaacaaccttcacattcatccttagttcctctttatgaagattttcatttatgttggagctatat-aagaacacatgaaatgg |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24623939 |
aattctgaagtacgcgctaacaaccttcacattcatccttaattcctctttatgaagattttcatttatgttggagctatataaagaacccatgaaatgg |
24624038 |
T |
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| Q |
284 |
t |
284 |
Q |
| |
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| |
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| T |
24624039 |
t |
24624039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 9439125 - 9439222
Alignment:
| Q |
281 |
tggtactcaccccatgataacaggctcataaatcagaaaatagcaaattatttcctcatcagaagtatctaagacttcttgtatgtccaaggtgaaaa |
378 |
Q |
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||||||||||| ||| |||| ||||| |||||||||| || |||||||| ||| ||||||||||| || ||||| |||||||||||||||||||||| |
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| T |
9439125 |
tggtactcacctcattataataggctagtaaatcagaacattgcaaattacttcgtcatcagaagtgtccaagacctcttgtatgtccaaggtgaaaa |
9439222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 9438821 - 9438877
Alignment:
| Q |
166 |
tgaagaaaataatctatcaaattctgaagtacgcgctaacaaccttcacattcatcc |
222 |
Q |
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| T |
9438821 |
tgaagaaaagaatctatcaaattatgaagaaatcgctaacaaccgttacattcatcc |
9438877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 11295117 - 11295158
Alignment:
| Q |
285 |
actcaccccatgataacaggctcataaatcagaaaatagcaa |
326 |
Q |
| |
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||||||| ||| |||||||||||||||||||||| ||||||| |
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| T |
11295117 |
actcacctcattataacaggctcataaatcagaacatagcaa |
11295158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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