View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_12 (Length: 433)
Name: NF11734_low_12
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 413
Target Start/End: Original strand, 2114379 - 2114789
Alignment:
| Q |
10 |
atgagatgaaattagaatagtgacgaaatagtggtggttattgtggaatttttgtgttgatgtgacgattttaagttgatgaaggttaagggtcctttgc |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
2114379 |
atgacatgaaattagaatagtgacgaaatagtggtggttattgtggaatttttgtgttgatgtgacgattttaagttgatcaaggttaagggtcctttac |
2114478 |
T |
|
| Q |
110 |
agttcacaattttaattactactcttaaagtcttaatctatgaagtgtgggtgtagacattagacatgacactaacacataggcaccggtgatattttat |
209 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114479 |
agttcacaattttaattactactcctagagtcttaatctatgaagtgtgggtgtagacattagacatgacactaacacataggcaccggtgatattttat |
2114578 |
T |
|
| Q |
210 |
tcataatctatgaagcgtccgtgtagacact-------acactgacacatagacatcggtaatattttcaaaaaatgaaaatgattgaatgtaacgacat |
302 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2114579 |
tcataatctatgaagcgtccgtgtagacactagacatgacactgacacatagacatcggtaatattttcaaaaaatgaaaatgattgaatgtaacgacat |
2114678 |
T |
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| Q |
303 |
acattggtgtcgtgttggtctccaccactcacacatgtcggacactagacacaccttcaatatgaattgtcggtgttacatagctcttaatggttcaggt |
402 |
Q |
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| T |
2114679 |
acattggtgtcgtgttggtctccaccactcacacatgtcggacactagacacaccttcaatatgaattgtcggtgttacatagctcttaatggttcaggt |
2114778 |
T |
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| Q |
403 |
tgtggagtagt |
413 |
Q |
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| T |
2114779 |
tgcggagtagt |
2114789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Original strand, 31668851 - 31668902
Alignment:
| Q |
334 |
cacatgtcggacactagacacaccttcaatatgaattgtcggtgttacatag |
385 |
Q |
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| T |
31668851 |
cacatgtcgaacactagacacgtcttcaatgtgaagtgtcggtgttacatag |
31668902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 31908715 - 31908664
Alignment:
| Q |
334 |
cacatgtcggacactagacacaccttcaatatgaattgtcggtgttacatag |
385 |
Q |
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||||||||| ||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
31908715 |
cacatgtcgaacactagacacgtcttcaatgtgaagtgtcggtgttacatag |
31908664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 31926789 - 31926738
Alignment:
| Q |
334 |
cacatgtcggacactagacacaccttcaatatgaattgtcggtgttacatag |
385 |
Q |
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||||||||| ||||||||||| ||||||| |||| |||||||||||||||| |
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| T |
31926789 |
cacatgtcgaacactagacacgtcttcaatgtgaagtgtcggtgttacatag |
31926738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 296
Target Start/End: Original strand, 23559656 - 23559705
Alignment:
| Q |
247 |
acacatagacatcggtaatattttcaaaaaatgaaaatgattgaatgtaa |
296 |
Q |
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| T |
23559656 |
acacatagacatcagtaataatttcaaaaaattgaagtgattgaatgtaa |
23559705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 384
Target Start/End: Original strand, 1741022 - 1741063
Alignment:
| Q |
343 |
gacactagacacaccttcaatatgaattgtcggtgttacata |
384 |
Q |
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| T |
1741022 |
gacactagacaaaccttcaatatgaagtgtaggtgttacata |
1741063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 35070052 - 35070000
Alignment:
| Q |
333 |
acacatgtcggacactagacacaccttcaatatgaattgtcggtgttacatag |
385 |
Q |
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|||||||| | |||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
35070052 |
acacatgttgaacactagacacaccttcaatcagaagtgtcggtgctacatag |
35070000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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