View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_15 (Length: 374)
Name: NF11734_low_15
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 4 - 359
Target Start/End: Original strand, 27945187 - 27945535
Alignment:
| Q |
4 |
cgatcatgagatcgtcgataaggatcggatgagtcacatttcaacttcgataaatcaatttaaaacctaaactctgaatatgaacgttcgatctttaccc |
103 |
Q |
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| T |
27945187 |
cgatcatgagatcgtcgataaagatcggacgagtcacatttcaacttcgataaatcaatttaaaacctaaactcagaatatgaacgtt-------taccc |
27945279 |
T |
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| Q |
104 |
aacgactcgaatctcatggctatagtaattgattcatattttgacatcatgtggactctaatttgattttgaactgcatatttatgctcaatactttatt |
203 |
Q |
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| T |
27945280 |
aacgactcgaatctcatggctatagtaattgtttcatattttgacatcatgtggactctaatttgattttgaactgcatatttatgctcaatactttatt |
27945379 |
T |
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| Q |
204 |
atcaatacctaagtgaaaagaaattgatgtgcagggaaaaaagaacaaattggtgtgacacgtttccatatggtacatgttgatgatgtagctagagcac |
303 |
Q |
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| T |
27945380 |
atcaatacctaagtgaaaagaaattgatgtgcagggaaaaaagaacaaattggtgtgacacgtttccacatggtacatgttgatgatgtagctagagcac |
27945479 |
T |
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| Q |
304 |
atatatatctacttgagaattctgttccaggaggtagatacaattgctcaccattc |
359 |
Q |
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| T |
27945480 |
atatatatctacttgagaattctgttccaggaggtagatacaattgctcaccattc |
27945535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 27985942 - 27985989
Alignment:
| Q |
272 |
tatggtacatgttgatgatgtagctagagcacatatatatctacttga |
319 |
Q |
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| T |
27985942 |
tatggtgcatgttgatgatgtggctagagcacatatatttttacttga |
27985989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 359
Target Start/End: Original strand, 28006195 - 28006282
Alignment:
| Q |
272 |
tatggtacatgttgatgatgtagctagagcacatatatatctacttgagaattctgttccaggaggtagatacaattgctcaccattc |
359 |
Q |
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| T |
28006195 |
tatggtgcatgttgatgatattgcaagagcacatatatttctgcttgagcatcctaatccaaaagggagatataattgctcaccattc |
28006282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 309
Target Start/End: Original strand, 27960749 - 27960790
Alignment:
| Q |
268 |
tccatatggtacatgttgatgatgtagctagagcacatatat |
309 |
Q |
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| T |
27960749 |
tccatatggtgcatgttgatgatgtggcaagagcacatatat |
27960790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 28014748 - 28014800
Alignment:
| Q |
268 |
tccatatggtacatgttgatgatgtagctagagcacatatatatctacttgag |
320 |
Q |
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| T |
28014748 |
tccatatggtgcatgttgatgatattgcaagagcacatatatttctgcttgag |
28014800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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