View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11734_low_16 (Length: 364)

Name: NF11734_low_16
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11734_low_16
NF11734_low_16
[»] chr8 (20 HSPs)
chr8 (15-355)||(27968598-27968946)
chr8 (93-355)||(27980274-27980536)
chr8 (93-355)||(28037576-28037838)
chr8 (15-230)||(27886682-27886905)
chr8 (15-230)||(27945340-27945563)
chr8 (15-230)||(28025583-28025806)
chr8 (192-283)||(27873540-27873631)
chr8 (308-355)||(27886906-27886953)
chr8 (308-355)||(27945564-27945611)
chr8 (308-355)||(28025807-28025854)
chr8 (268-351)||(16895583-16895666)
chr8 (15-65)||(2871531-2871581)
chr8 (15-61)||(13422659-13422705)
chr8 (15-65)||(20182888-20182938)
chr8 (15-65)||(12579557-12579607)
chr8 (15-65)||(16385076-16385126)
chr8 (15-65)||(28875593-28875643)
chr8 (15-65)||(36484464-36484514)
chr8 (15-65)||(37669608-37669658)
chr8 (15-65)||(43770731-43770781)
[»] chr3 (5 HSPs)
chr3 (192-288)||(54431108-54431203)
chr3 (15-65)||(10224178-10224228)
chr3 (15-65)||(1529061-1529111)
chr3 (15-65)||(40499424-40499474)
chr3 (15-65)||(52121803-52121853)
[»] chr1 (7 HSPs)
chr1 (268-351)||(15809360-15809443)
chr1 (15-65)||(37922714-37922764)
chr1 (15-65)||(20409139-20409189)
chr1 (15-65)||(28658429-28658479)
chr1 (15-65)||(36363093-36363143)
chr1 (15-65)||(38949184-38949234)
chr1 (16-65)||(3427886-3427935)
[»] chr5 (6 HSPs)
chr5 (15-65)||(18001525-18001575)
chr5 (15-65)||(26794020-26794070)
chr5 (15-65)||(3934355-3934405)
chr5 (15-65)||(33830631-33830681)
chr5 (15-65)||(34032865-34032915)
chr5 (15-65)||(41392275-41392325)
[»] chr4 (9 HSPs)
chr4 (15-61)||(47607600-47607646)
chr4 (15-50)||(51859295-51859330)
chr4 (15-65)||(14796049-14796099)
chr4 (15-65)||(19739149-19739199)
chr4 (15-65)||(24784971-24785021)
chr4 (15-65)||(24823245-24823295)
chr4 (15-65)||(42472194-42472244)
chr4 (15-65)||(44521592-44521642)
chr4 (15-65)||(52573663-52573713)
[»] chr7 (5 HSPs)
chr7 (15-54)||(26773131-26773170)
chr7 (15-65)||(27397145-27397195)
chr7 (15-65)||(44270238-44270288)
chr7 (15-65)||(34238604-34238654)
chr7 (15-65)||(42897430-42897480)
[»] chr2 (7 HSPs)
chr2 (15-65)||(40431584-40431634)
chr2 (15-53)||(4356368-4356406)
chr2 (15-65)||(7877163-7877213)
chr2 (15-65)||(22571448-22571498)
chr2 (15-65)||(40307865-40307915)
chr2 (16-65)||(6125212-6125261)
chr2 (15-63)||(34146702-34146750)
[»] scaffold0060 (1 HSPs)
scaffold0060 (15-65)||(29672-29722)
[»] scaffold0005 (1 HSPs)
scaffold0005 (15-65)||(43632-43682)
[»] chr6 (2 HSPs)
chr6 (15-65)||(6707552-6707602)
chr6 (15-65)||(26327843-26327893)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 27968598 - 27968946
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat-------gtat-gtatctcgaatccgggcttcacaacatcatctaattt 106  Q
    |||||||||| |||||| ||||| ||||||||||||||||||||||| |||       |||| |||||||||||| ||||||||||||||||||||| ||    
T  27968598 attaatgtattccagccatatcgtatcttgatttttaaaaaatttccatatcggtgcagtatcgtatctcgaatcagggcttcacaacatcatctaaatt 27968697  T
Q  107 tttctaccctccacctgtttaccggctgtacatgttccctgcannnnnnnnnnnnnnnnnnnnnnnactttaatgtgttacaaattcatcatcgtcccct 206  Q
    ||||||||||||||||||||||||  |||||||||||||||||                       |||||||||||||  |||||||||||| ||||||    
T  27968698 tttctaccctccacctgtttaccgattgtacatgttccctgcattttttttatatatttttgttttactttaatgtgtttgaaattcatcatcctcccct 27968797  T
Q  207 tcattgcacaatctttcatactgcccttttccttggtccttcgttctaaagagctcctgcgctgcaaactccattcaatcattattaccccaaatttcct 306  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  27968798 tcattgcacaatctttcatactgcccttttctttagtccttcgttctaaagagctcctgcgctgcaaactccattcaattatgattaccccaaatttcct 27968897  T
Q  307 ttctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 355  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  27968898 ttctcttgcagacttaaacttttaaaattgttgatttgtttgacctttg 27968946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 93 - 355
Target Start/End: Original strand, 27980274 - 27980536
Alignment:
Q  93 acatcatctaattttttctaccctccacctgtttaccggctgtacatgttccctgcannnnnnnnnnnnnnnnnnnnnnnactttaatgtgttacaaatt 192  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                       ||||||||||||| ||||||    
T  27980274 acatcatctaattttttctaccctccacctgtttaccggttgtacatgttccctgcattttttttatatatttttgttttactttaatgtgtttcaaatt 27980373  T
Q  193 catcatcgtccccttcattgcacaatctttcatactgcccttttccttggtccttcgttctaaagagctcctgcgctgcaaactccattcaatcattatt 292  Q
    |||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27980374 catcatcgtccccttcattgcacaatctttcatattgaccttttcattggtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgatt 27980473  T
Q  293 accccaaatttcctttctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27980474 accccaaatttcctttctcttgaagacttaaacttttaaaagtgttgctttgtttgacctttg 27980536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 93 - 355
Target Start/End: Original strand, 28037576 - 28037838
Alignment:
Q  93 acatcatctaattttttctaccctccacctgtttaccggctgtacatgttccctgcannnnnnnnnnnnnnnnnnnnnnnactttaatgtgttacaaatt 192  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                       ||||||||||||| ||||||    
T  28037576 acatcatctaattttttctaccctccacctgtttaccggttgtacatgttccctgcattttttttatatatttttgttttactttaatgtgtttcaaatt 28037675  T
Q  193 catcatcgtccccttcattgcacaatctttcatactgcccttttccttggtccttcgttctaaagagctcctgcgctgcaaactccattcaatcattatt 292  Q
    |||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28037676 catcatcgtccccttcattgcacaatctttcatattgaccttttcattggtccttcgttctaaagagctcctgcgctgcaaactccattcaatcatgatt 28037775  T
Q  293 accccaaatttcctttctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28037776 accccaaatttcctttctcttgaagacttaaacttttaaaagtgttgctttgtttgacctttg 28037838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 27886682 - 27886905
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat-------gtat-gtatctcgaatccgggcttcacaacatcatctaattt 106  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  27886682 attaatgtatcccaaccgtatcgaatcttgatttttaaaaattttccgtatcggtgcagtattgtatctcgaatccgggcttcacaacatcatctaattt 27886781  T
Q  107 tttctaccctccacctgtttaccggctgtacatgttccctgcannnnnnnnnnnnnnnnnnnnnnnactttaatgtgttacaaattcatcatcgtcccct 206  Q
    |||||||||||| |||||||||||| |||||||||||||||||                       ||||||||||||| ||||||||||||||||||||    
T  27886782 tttctaccctccccctgtttaccggttgtacatgttccctgcattttttttatatatttttgttttactttaatgtgtttcaaattcatcatcgtcccct 27886881  T
Q  207 tcattgcacaatctttcatactgc 230  Q
    || ||||||||||||| |||||||    
T  27886882 tcgttgcacaatcttttatactgc 27886905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 27945340 - 27945563
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat-------gtat-gtatctcgaatccgggcttcacaacatcatctaattt 106  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  27945340 attaatgtatcccaaccgtatcgaatcttgatttttaaaaattttccgtatcggtgcagtattgtatctcgaatccgggcttcacaacatcatctaattt 27945439  T
Q  107 tttctaccctccacctgtttaccggctgtacatgttccctgcannnnnnnnnnnnnnnnnnnnnnnactttaatgtgttacaaattcatcatcgtcccct 206  Q
    |||||||||||| |||||||||||| |||||||||||||||||                       ||||||||||||| ||||||||||||||||||||    
T  27945440 tttctaccctccccctgtttaccggttgtacatgttccctgcattttttttatatatttttgttttactttaatgtgtttcaaattcatcatcgtcccct 27945539  T
Q  207 tcattgcacaatctttcatactgc 230  Q
    || ||||||||||||| |||||||    
T  27945540 tcgttgcacaatcttttatactgc 27945563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 28025583 - 28025806
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat-------gtat-gtatctcgaatccgggcttcacaacatcatctaattt 106  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||       |||| |||||||||||||||||||||||||||||||||||||    
T  28025583 attaatgtatcccaaccgtatcgaatcttgatttttaaaaattttccgtatcggtgcagtattgtatctcgaatccgggcttcacaacatcatctaattt 28025682  T
Q  107 tttctaccctccacctgtttaccggctgtacatgttccctgcannnnnnnnnnnnnnnnnnnnnnnactttaatgtgttacaaattcatcatcgtcccct 206  Q
    |||||||||||| |||||||||||| |||||||||||||||||                       ||||||||||||| ||||||||||||||||||||    
T  28025683 tttctaccctccccctgtttaccggttgtacatgttccctgcattttttttatatatttttgttttactttaatgtgtttcaaattcatcatcgtcccct 28025782  T
Q  207 tcattgcacaatctttcatactgc 230  Q
    || ||||||||||||| |||||||    
T  28025783 tcgttgcacaatcttttatactgc 28025806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 283
Target Start/End: Original strand, 27873540 - 27873631
Alignment:
Q  192 tcatcatcgtccccttcattgcacaatctttcatactgcccttttccttggtccttcgttctaaagagctcctgcgctgcaaactccattca 283  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  27873540 tcatcattgtccccttcattgcacaatctttcatactacccttttccttggtccttcgttctaaagagctcctacggtgcaaactccattca 27873631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 27886906 - 27886953
Alignment:
Q  308 tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27886906 tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 27886953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 27945564 - 27945611
Alignment:
Q  308 tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27945564 tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 27945611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 28025807 - 28025854
Alignment:
Q  308 tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28025807 tctcttgaagacttaaacttttaaaagtgttgatttgtttgacctttg 28025854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 351
Target Start/End: Original strand, 16895583 - 16895666
Alignment:
Q  268 ctgcaaactccattcaatcattattaccccaaatttcctttctcttgaagacttaaacttttaaaagtgttgatttgtttgacc 351  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||  ||||||||||||||||  ||| |||| |||||||    
T  16895583 ctgcaaactccattcaatcatgattaccccacatcttctttctcttgataacttaaacttttaaaatggtttatttctttgacc 16895666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 2871581 - 2871531
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||||||||||||||||||||| |||||||||||| |||  |||||||||    
T  2871581 attaatgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 2871531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 13422659 - 13422705
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttcc 61  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  13422659 attaacgtatcccagccgtatcgtatcttgatttttaaaaattttcc 13422705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 20182888 - 20182938
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||| | ||||||||| |||||||||||||||||||||||||||    
T  20182888 attaacgtatctcggccgtatcgtatcttgatttttaaaaaatttccgtat 20182938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 12579607 - 12579557
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  12579607 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 12579557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 16385076 - 16385126
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  16385076 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 16385126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 28875643 - 28875593
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  28875643 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 28875593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 36484464 - 36484514
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  36484464 attaacgtatctcagccgtatcgtatcttgatttttgaaaattttccgtat 36484514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 37669608 - 37669658
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  37669608 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 37669658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 43770781 - 43770731
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  43770781 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 43770731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 54431108 - 54431203
Alignment:
Q  192 tcatcatcgtccccttcattgcacaatctttcatactgcccttttccttggtccttcgttctaaagagctcctgcgctgcaaactccattcaatcat 288  Q
    |||||||||||||||| |||||||||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  54431108 tcatcatcgtccccttgattgcacaatctttcg-actgtccttttccttggtccttcgttctaaagagctcctgcactgcaaactccattcaatcat 54431203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 10224228 - 10224178
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| ||||||||||||||||  |||||||||    
T  10224228 attaacgtatcccagccgtatcgtatcttgatttttaaaatttttccgtat 10224178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 1529061 - 1529111
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  1529061 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 1529111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 40499424 - 40499474
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  40499424 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 40499474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 52121803 - 52121853
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  52121803 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 52121853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 351
Target Start/End: Complemental strand, 15809443 - 15809360
Alignment:
Q  268 ctgcaaactccattcaatcattattaccccaaatttcctttctcttgaagacttaaacttttaaaagtgttgatttgtttgacc 351  Q
    ||||||||||||||||||||| ||||||||| || | |||||||||||  ||||||||||||||||  ||| |||| |||||||    
T  15809443 ctgcaaactccattcaatcatgattaccccacatcttctttctcttgataacttaaacttttaaaatggtttatttctttgacc 15809360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 37922714 - 37922764
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||| ||||    
T  37922714 attaacgtatcccagccgtatcgtatcttgatttttaaaaattttctgtat 37922764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 20409189 - 20409139
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  20409189 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 20409139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 28658479 - 28658429
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  28658479 attaacgtatctcagccgtatcgtatcttgatttttgaaaattttccgtat 28658429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 36363143 - 36363093
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  36363143 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 36363093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 38949184 - 38949234
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| ||||| |||||| |||| |||||||||    
T  38949184 attaacgtatcccagccgtatcgtatcttaatttttgaaaattttccgtat 38949234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 3427886 - 3427935
Alignment:
Q  16 ttaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    |||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  3427886 ttaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 3427935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 18001575 - 18001525
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  18001575 attaacgtatcctagccgtatcgtatcttgatttttaaaaaatttccgtat 18001525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 26794070 - 26794020
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| ||||||||||||||||  |||||||||    
T  26794070 attaacgtatcccagccgtatcgtatcttgatttttaaaatttttccgtat 26794020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 3934405 - 3934355
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    |||||||||||||| |  ||||| |||||||||||||||||||||| ||||    
T  3934405 attaatgtatcccaacaatatcgtatcttgatttttaaaaaatttctgtat 3934355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 33830631 - 33830681
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  33830631 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 33830681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 34032865 - 34032915
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  34032865 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 34032915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 41392325 - 41392275
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  41392325 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 41392275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 47607600 - 47607646
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttcc 61  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||    
T  47607600 attaacgtatcccagccgtatcgtatcttgatttttaaaaaatttcc 47607646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 51859295 - 51859330
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgattttt 50  Q
    ||||||||||||||||||||||| ||||||||||||    
T  51859295 attaatgtatcccagccgtatcgtatcttgattttt 51859330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 14796049 - 14796099
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||| |||| ||||    
T  14796049 attaacgtatcccagccgtatcgtatcttgatttttgaaaattttctgtat 14796099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 19739149 - 19739199
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  19739149 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 19739199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 24784971 - 24785021
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  24784971 attaacgtatctcagccgtatcgtatcttgatttttgaaaattttccgtat 24785021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 24823295 - 24823245
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||| ||||||||||| |||||||||||| |||| |||||||||    
T  24823295 attaacgtatctcagccgtatcgtatcttgatttttgaaaattttccgtat 24823245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 42472244 - 42472194
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  42472244 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 42472194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 44521642 - 44521592
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  44521642 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 44521592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 52573663 - 52573713
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  52573663 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 52573713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 54
Target Start/End: Complemental strand, 26773170 - 26773131
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaa 54  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  26773170 attaatgtatcccagccgtatcgtatcttgatttttaaaa 26773131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 27397195 - 27397145
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||||||||||||||||||||| |||||||||||| |||  |||||||||    
T  27397195 attaatgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 27397145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 44270238 - 44270288
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||| | ||||||||| |||||||||||||||||||||||||||    
T  44270238 attaacgtatctcggccgtatcgtatcttgatttttaaaaaatttccgtat 44270288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 34238604 - 34238654
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  34238604 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 34238654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 42897430 - 42897480
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  42897430 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 42897480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 40431634 - 40431584
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| ||||||||||||||||  |||||||||    
T  40431634 attaacgtatcccagccgtatcgtatcttgatttttaaaatttttccgtat 40431584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 4356368 - 4356406
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaa 53  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  4356368 attaacgtatcccagccgtatcgtatcttgatttttaaa 4356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 7877163 - 7877213
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  7877163 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 7877213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 22571448 - 22571498
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  22571448 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 22571498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 40307915 - 40307865
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  40307915 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 40307865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 6125212 - 6125261
Alignment:
Q  16 ttaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    |||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  6125212 ttaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 6125261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 34146702 - 34146750
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgt 63  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||    
T  34146702 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgt 34146750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 29722 - 29672
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  29722 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 29672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 43682 - 43632
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||| |||| ||||    
T  43682 attaacgtatcccagccgtatcgtatcttgatttttgaaaattttctgtat 43632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 6707602 - 6707552
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| |||||| |||||||||| ||||||||||||||||  |||||||||    
T  6707602 attaacgtatccaagccgtatcgtatcttgatttttaaaatttttccgtat 6707552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 26327843 - 26327893
Alignment:
Q  15 attaatgtatcccagccgtatcgaatcttgatttttaaaaaatttccgtat 65  Q
    ||||| ||||||||||||||||| |||||||||||| |||  |||||||||    
T  26327843 attaacgtatcccagccgtatcgtatcttgatttttgaaatttttccgtat 26327893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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