View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_17 (Length: 307)
Name: NF11734_low_17
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 24623790 - 24623492
Alignment:
| Q |
1 |
ttttctctttcaattcggttattaatgtcatcaatcatggcttgtcgtttattctcacttcacgacattgcttatcaagaggtaagtttcaatttctaac |
100 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24623790 |
ttttttctttcaattcggttattaatgtcatcaatcatggcttgtcgtttattctcacttcacgacattgcttatcaagaggtaaatttcaatttctaac |
24623691 |
T |
|
| Q |
101 |
taatgatattgctattaaacttgcacatgattgtaatggcttcatacaggatctagaatagatattaatctaatttaatttaatgatattgctatagtaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24623690 |
taatgatattgctattaaacttgcacatgattgtaatggcttcatacaggatctataatagaaattaatctaatttaatttaatgatattgctatagtac |
24623591 |
T |
|
| Q |
201 |
ttagtctaagatattggtctgttcaactaaaacattattaaccgaaactgaaacattat-------taaccttgttaggttttagttgatcttgatgtc |
292 |
Q |
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| T |
24623590 |
ttagtctaagatattggcctgttcaactaaaacattattaaccgaaactgaaacaatataaatagataaccttgttagtttttagctgatctttatgtc |
24623492 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 148
Target Start/End: Complemental strand, 29980765 - 29980708
Alignment:
| Q |
91 |
aatttctaactaatgatattgctattaaacttgcacatgattgtaatggcttcataca |
148 |
Q |
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||||||||||||||||||||| ||| ||||||| |||| | |||||||| |||||||| |
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| T |
29980765 |
aatttctaactaatgatattgttataaaacttggacattactgtaatggtttcataca |
29980708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 16588101 - 16588033
Alignment:
| Q |
22 |
ttaatgtcatcaatcatggcttgtcgtttattctcacttcacgacattgcttatcaagaggtaagtttc |
90 |
Q |
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||||||||||| ||||| |||| | || | ||||||||||||| |||||||| |||||||||| |||| |
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| T |
16588101 |
ttaatgtcatctatcattgcttattgtgtcgtctcacttcacgatattgcttaccaagaggtaaatttc |
16588033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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