View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11734_low_19 (Length: 284)

Name: NF11734_low_19
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11734_low_19
NF11734_low_19
[»] chr2 (2 HSPs)
chr2 (12-269)||(21191262-21191509)
chr2 (1-67)||(18247717-18247784)
[»] chr3 (3 HSPs)
chr3 (1-267)||(36466022-36466269)
chr3 (12-269)||(36471243-36471487)
chr3 (1-45)||(43861712-43861756)
[»] chr5 (6 HSPs)
chr5 (116-269)||(29389441-29389593)
chr5 (1-84)||(29390563-29390646)
chr5 (116-188)||(29390503-29390575)
chr5 (1-84)||(29389369-29389453)
chr5 (1-67)||(3035031-3035098)
chr5 (1-67)||(15525364-15525431)
[»] chr7 (2 HSPs)
chr7 (5-83)||(19064312-19064390)
chr7 (12-67)||(46159868-46159924)
[»] chr4 (3 HSPs)
chr4 (1-67)||(43939118-43939185)
chr4 (12-67)||(10657192-10657248)
chr4 (12-67)||(10871337-10871393)
[»] chr6 (1 HSPs)
chr6 (1-67)||(24160341-24160408)


Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 21191509 - 21191262
Alignment:
Q  12 gttgtttccaaaatcacatccggtatcatgacttatatttcttattgatttgatttacactatcgtgagaatcatgctgttattaggcacattgatcctg 111  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||         ||||| | ||||||||||||||||||||||||    
T  21191509 gttgtttccaaaatcacatcaggtatcacaacttatatttcttattgatttgatttaca---------gaatcctactgttattaggcacattgatcctg 21191419  T
Q  112 ctgttatcgtgagaaacctatcgttgctactctaggcctagatttcaaattgaatcctagtttcttgatctgaaatctatcgtgagaatcctatcgtgct 211  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21191418 ctgttattgtgagaatcctatcgttgctaatctaggcctagattacaaattgaatcctagtttcttgatctgaaatctatcatgagaatcctatcgtgct 21191319  T
Q  212 atttcaaaatatttaggggctaaatttgaatggttgatacaaattcgcatgtcattac 269  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||    
T  21191318 atttcaaaatatttaggggctaaa-ttgaatggttgttacaaatttgcatgccattac 21191262  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18247717 - 18247784
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    ||||||||| ||||||||||| ||||||||| | ||||||||||| || |||||| ||||||||||||    
T  18247717 tgagaatcggcgttgtttccataatcacatcagatatcatgacttgatttttcttcttgatttgattt 18247784  T

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Target: chr3 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 36466022 - 36466269
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgacttatatttcttattgatttgatttacactatcgtgagaatcatgctgttattaggca 100  Q
    ||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36466022 tgagaatcgccgttgtttccaaaatcacatcaggtatcgtgacttatctttcttattgatttgatttacactatggtgagaatcatgctgttattaggca 36466121  T
Q  101 cattgatcctgctgttatcgtgagaaacctatcgttgctactctaggcctagatttcaaattgaatcctagtttcttgatctgaaatctatcgtgagaat 200  Q
    ||||||||||||    |||||||||| |||||||| | || | ||||||||  || |||||||||||||||||||||||||||||||                 
T  36466122 cattgatcctgc----atcgtgagaatcctatcgtcggtaatttaggcctaccttacaaattgaatcctagtttcttgatctgaaat------------- 36466204  T
Q  201 cctatcgtgctatttcaaaatatttaggggctaaatttgaatggttgatacaaattcgcatgtcatt 267  Q
     |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||    
T  36466205 -ctatcgtgctatttcaaaatatttaggggctaaa-ttgaatggttgttacaaatttgcatgccatt 36466269  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 36471487 - 36471243
Alignment:
Q  12 gttgtttccaaaatcacatccggtatcatgacttatatttcttattgatttgatttacactatcgtgagaatcatgctgttattaggcacattgatcctg 111  Q
    |||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||    
T  36471487 gttgtttccaaaatcacatcaggtatcacgacttatctttcttattgatttgatttacattatggtgagaatcctgttgttattaggcacattgatcctg 36471388  T
Q  112 ctgttatcgtgagaaacctatcgttgctactctag--gcctagatttcaaattgaatcctagtttcttgatctgaaatctatcgtgagaatcctatcgtg 209  Q
    ||||||||||||||| |||||||||| || | |||  | ||| ||| |||||||||||||||||||||||||||||||              ||||||||    
T  36471387 ctgttatcgtgagaatcctatcgttggtaatttaggtggctacattacaaattgaatcctagtttcttgatctgaaat--------------ctatcgtg 36471302  T
Q  210 ctatttcaaaatatttaggggctaaatttgaatggttgatacaaattcgcatgtcattac 269  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||    
T  36471301 ctatttcaaaatatttaggggctaaa-ttgaacggttgttacaaatttgcatgccattac 36471243  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43861712 - 43861756
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgactt 45  Q
    |||||||||  |||||||||| ||||||||| |||||||||||||    
T  43861712 tgagaatcggtgttgtttccataatcacatcaggtatcatgactt 43861756  T

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Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 116 - 269
Target Start/End: Original strand, 29389441 - 29389593
Alignment:
Q  116 tatcgtgagaaacctatcgttgctactctaggcctagatttcaaattgaatcctagtttcttgatctgaaatctatcgtgagaatcctatcgtgctattt 215  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29389441 tatcgtgagaatcctatcgttgctaatctaggcctagattacaaattgaatcctagtttcttgatctgaaatctatcgtgagaatcctatagtgctattt 29389540  T
Q  216 caaaatatttaggggctaaatttgaatggttgatacaaattcgcatgtcattac 269  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||    
T  29389541 caaaatatttaggggctaaa-ttgaatggttgttacaaattcgcatgccattac 29389593  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 29390646 - 29390563
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgacttatatttcttattgatttgatttacactatcgtgagaatc 84  Q
    ||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  29390646 tgagaatcgccgttgtttccaaaatcacatcaggtatcacgacttatatttcttattgatttgatttacactatcgtgagaatc 29390563  T

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Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 29390575 - 29390503
Alignment:
Q  116 tatcgtgagaaacctatcgttgctactctaggcctagatttcaaattgaatcctagtttcttgatctgaaatc 188  Q
    ||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||    
T  29390575 tatcgtgagaatcctatcgttgctaatctaggcctagattacaaattgaatcctagttttttgatctgaaatc 29390503  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 29389369 - 29389453
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatga-cttatatttcttattgatttgatttacactatcgtgagaatc 84  Q
    |||||||||  ||| |||||||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||||||||||    
T  29389369 tgagaatcgcagttatttccaaaatcacatcaggtatcaccaacttatatttcttattgatttgatttacactatcgtgagaatc 29389453  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 3035031 - 3035098
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    ||||||||| ||||||||||| ||||||||| |||||| |||||| || |||||| ||||||||||||    
T  3035031 tgagaatcggcgttgtttccataatcacatcaggtatcgtgacttgatttttcttcttgatttgattt 3035098  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15525364 - 15525431
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    |||||||||  |||||||||| |||||||||  |||||||||||| || |||||| ||||||||||||    
T  15525364 tgagaatcggtgttgtttccataatcacatcaagtatcatgacttgatttttcttcttgatttgattt 15525431  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 19064312 - 19064390
Alignment:
Q  5 aatcgtcgttgtttccaaaatcacatccggtatcatgacttatatttcttattgatttgatttacactatcgtgagaat 83  Q
    ||||| ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  19064312 aatcgccgttgtttccaaaatcacatcaggtatcacaacttatatttcttattgatttgatttacactatcgtgagaat 19064390  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 46159868 - 46159924
Alignment:
Q  12 gttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    |||||||||| ||||||||| ||||||||||||| || | |||| ||||||||||||    
T  46159868 gttgtttccataatcacatcaggtatcatgacttgatttctcttcttgatttgattt 46159924  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43939185 - 43939118
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    |||||||||  |||||||||| ||||||||| ||||||||||||| || |||||| ||||||||||||    
T  43939185 tgagaatcggtgttgtttccataatcacatcaggtatcatgacttgatttttcttcttgatttgattt 43939118  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 10657192 - 10657248
Alignment:
Q  12 gttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    |||||||||| ||||||||| |||||||||||||  | |||||| ||||||||||||    
T  10657192 gttgtttccataatcacatcaggtatcatgacttgctttttcttcttgatttgattt 10657248  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 10871337 - 10871393
Alignment:
Q  12 gttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    |||||||||| ||||||||| |||||||||||||  | |||||| ||||||||||||    
T  10871337 gttgtttccataatcacatcaggtatcatgacttgctttttcttcttgatttgattt 10871393  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 24160341 - 24160408
Alignment:
Q  1 tgagaatcgtcgttgtttccaaaatcacatccggtatcatgactt-atatttcttattgatttgattt 67  Q
    |||||||||  |||||||||| ||||||||| ||||||||||||| || |||||| |||| |||||||    
T  24160341 tgagaatcggtgttgtttccataatcacatcaggtatcatgacttgatttttcttcttgaattgattt 24160408  T

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