View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_20 (Length: 277)
Name: NF11734_low_20
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 6475288 - 6475020
Alignment:
| Q |
8 |
aagtttgatgtagatttaatgtaagtttaacctcaagcagaagttactaggcaaataaa----------agtaaaatatttttatacatgaatcaactac |
97 |
Q |
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| T |
6475288 |
aagtttgatgtagatttaatgtaagtttaacctcaagcagaagttactaggcaaataaatatgatttaaagtaaaatatttttatacatgaatcaactac |
6475189 |
T |
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| Q |
98 |
tgtctataagaatcaacttaacaactactgcctatattttgtccnnnnnnnnnnnnnnnnnctacggtctatatctaggaaattagattaagatcaaacc |
197 |
Q |
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| T |
6475188 |
tgtctataagaatcaacttaacaactactgtctatattttgtc-aaaaaaaaaaaaaaaaactaccgtctatatctaagaaattggattaagatcaaacc |
6475090 |
T |
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| Q |
198 |
acttaaattttaagtttataaatttcaaatcacaaattgacatagtcaaaatataagttctgatgtccat |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
6475089 |
acttaaattttaagtttataaatttcaaatcacaaattgacatagttaaaatataagttctgatttccat |
6475020 |
T |
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