View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_6 (Length: 530)
Name: NF11734_low_6
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 12 - 515
Target Start/End: Complemental strand, 43602999 - 43602496
Alignment:
| Q |
12 |
gagatgcaaacattgctaacataaagtctcaaatttccctagctttgccttaaactactcatttcttttgataattaataaatttacaaggatcggcaaa |
111 |
Q |
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| T |
43602999 |
gagatgcaaacattgctaacataaagtctcaaatttccctagctttgccttaaactactcatttcttttgataattaataaatttacaaggatcggcaaa |
43602900 |
T |
|
| Q |
112 |
ccgaacagagaaagatctagacaggtaatctggttcatcaaacactgtcccttgttcaaaattctgagaataagtgaaaggatcataaggatcctgctgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602899 |
ccgaacagagaaagatctagacaggtaatctggttcatcaaacactgtcccttgttcaaaattctgagaataagtgaaaggatcataaggatcctgctgc |
43602800 |
T |
|
| Q |
212 |
aaaggtgatgatgtagactcaagtagcttcttcttctctttcttgagcttcatccacaacattttccatctaaatttacttgatcttgtagctgctgata |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43602799 |
aaaggtgatgatgtagactcaagtagcttcttcttctctttcttgagcttcatccacaacattttccatctaaatttacttgatcttgtagttgctgata |
43602700 |
T |
|
| Q |
312 |
gagagtttgtgtgctcgatatcatagcaaaatcttcccaattctttggtcttcctgctagaattgcactcgcttttgatatccatggcagctgctagtga |
411 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602699 |
gagagtttgtgtgctcgatttcatagcaaaatcttcccaattctttggtcttcctgctagaattgcactcgcttttgatatccatggcagctgctagtga |
43602600 |
T |
|
| Q |
412 |
aataagtaaactcatgagaagtgactaaacttgagaatacaagcacatgctattgcttttgatataagagtgtctactcttggcctatatagcactaata |
511 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43602599 |
aataagtaaactgatgagaagtgactaaacttgagaatacaagcacatgctattgcatttgatataagagtgtctactcttggcctatatagcactaata |
43602500 |
T |
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| Q |
512 |
caaa |
515 |
Q |
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|||| |
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| T |
43602499 |
caaa |
43602496 |
T |
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