View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_8 (Length: 510)
Name: NF11734_low_8
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Complemental strand, 7332918 - 7332432
Alignment:
| Q |
19 |
agaagatcctcaaacccagttacaatgagcttcatctcctttctgaaatgatttgtaataaatggaatgtccatcttggatttcttcactatgccaaaag |
118 |
Q |
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| T |
7332918 |
agaagatcctcaaacccagttacaatgagcttcatatcctttctgaaatgatttgtaattaatggaatgttcatcttggatttcttcagtatgccgaaag |
7332819 |
T |
|
| Q |
119 |
tttcaaaccaccataagtagttgctaatgtggatctctgcatctttaattatttctccagctactgttctccattgcttttcagtttctgttattaactg |
218 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
7332818 |
tttcaaaccaccataagtagttgctaatgtagatctctgcatcttcaattatttctccagctactgttttccattgcttttcagtttctgttattaactg |
7332719 |
T |
|
| Q |
219 |
aagctgactcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtccatggccatgctctta |
318 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
7332718 |
aagctgacgcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtccattgccacgctctta |
7332619 |
T |
|
| Q |
319 |
ttcatcaattgatcaaaacttggagaaggcttattctgcatttggttttgagctgctacagatgtatggacctctctagctggagatctatcctcctctt |
418 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
7332618 |
ttcatcaattgatcaaaacttattgaaggctttttctgcatttggttttgagctgctacagatgtgtggacctctctagctacagatctatcctcctctt |
7332519 |
T |
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| Q |
419 |
caaatgtaaattgatccagaagacttctactctttgaccttgatttctccattgacgtatggatgtattcggcattttcatctctct |
505 |
Q |
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| T |
7332518 |
caaatgtaaattgatccagaagacttctactctttgaccttgatttctccattgacatatggatgtatttggcattttcatttctct |
7332432 |
T |
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Back To:
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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 114 - 304
Target Start/End: Complemental strand, 6820484 - 6820294
Alignment:
| Q |
114 |
aaaagtttcaaaccaccataagtagttgctaatgtggatctctgcatctttaattatttctccagctactgttctccattgcttttcagtttctgttatt |
213 |
Q |
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|||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||||||| | |||||||||||||| ||||| ||||| ||| | |
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| T |
6820484 |
aaaagtatcaaaccaccttaagtagtttcaaatgtggatctcagcatctttaattatttcttctgctactgttctccagcaattttctgtttcagtttct |
6820385 |
T |
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| Q |
214 |
aactgaagctgactcaaatccttcaggaaagcatgcagtggaagtagaaggtatatcgaccatctctcttccatgccagaaaataggtcca |
304 |
Q |
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|| ||||| |||||||| ||||| ||||||||||||| |||||| | || || || ||| |||||||||||||| |||||||| |||| |
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| T |
6820384 |
aattgaagatgactcaagtccttgaggaaagcatgcaatggaagcatgagatagatagacggtctctcttccatgctcgaaaatagctcca |
6820294 |
T |
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