View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11734_low_9 (Length: 475)
Name: NF11734_low_9
Description: NF11734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11734_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 9 - 460
Target Start/End: Complemental strand, 25061090 - 25060640
Alignment:
| Q |
9 |
agcagagaaagagtagagaagtgacaatttttcttctgatttgaaatgtt-atattaaacaggtgagataaacatcttcattctgacataaagatgcaaa |
107 |
Q |
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| T |
25061090 |
agcaaagaaagagtagagaagtgaccatttttcttccgatttgaaatgtttatattaaactggtgagataaacatcttcattctgacataaagatgcaaa |
25060991 |
T |
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| Q |
108 |
tctatgttttcataagatattggatctctattcgagttaaaaatatatttatttacaatannnnnnnnngaaggaaagttaaaaattataaatatattta |
207 |
Q |
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| T |
25060990 |
tctatgttttcataagatattggatctctattcaagttaaaaatatatttatttataat--ttttttttgaaggaaagttaaaaattataaatatattta |
25060893 |
T |
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| Q |
208 |
tttataattttcttagcatgttgaaataaacatattcgttttgacatgaagagatgcagatctcttttctttctatctatgcttgcaaatccttaagagc |
307 |
Q |
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| T |
25060892 |
tttataattttcttagcatgttgaaataaacatattcgttttgacatgaagagatgcagatctcttttctttctatctatgcttgcaaatccttaagagc |
25060793 |
T |
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| Q |
308 |
atatccctttatattgacgcaattaacacatgccgtcagttgatccaccgaaacattgtttcttgattaattaatcgttgaaaattttgcttgagagttc |
407 |
Q |
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| T |
25060792 |
atatccctttatattgacgcaattaacacatgccgtcagttgatccaccgaaacattgtttcttgataaattaatcgttgaaaattttgcttgagagttc |
25060693 |
T |
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| Q |
408 |
aagaaaatattatttgaagtttccaggaccggacactagaacatggttgaaat |
460 |
Q |
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| T |
25060692 |
aagaaaatattattttaagtttccaggaccgcacactagaacatggttgaaat |
25060640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 25061325 - 25061209
Alignment:
| Q |
45 |
tgatttgaaatgttatattaaacaggtgagataaacatcttcattctgacataaagatgcaaatctatgttttcataagatattggatctctattcgagt |
144 |
Q |
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| T |
25061325 |
tgatttgaaatgttatattaaactggtgagataaacatctt-attctggcatgaagatgcaaatctatcttttcataagacattgaatctctattcaagt |
25061227 |
T |
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| Q |
145 |
taaaaatatatttattta |
162 |
Q |
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| T |
25061226 |
taaaaatatatttattta |
25061209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 162
Target Start/End: Complemental strand, 25111914 - 25111797
Alignment:
| Q |
45 |
tgatttgaaatgttatattaaacaggtgagataaacatcttcattctgacataaagatgcaaatctatgttttcataagatattggatctctattcgagt |
144 |
Q |
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| T |
25111914 |
tgatttaaaatgttatattaaactattgaaataaacatcttcgttctaacatgaagatgcaaatctctgtttttataagacattgaatctcaattcaagt |
25111815 |
T |
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| Q |
145 |
taaaaatatatttattta |
162 |
Q |
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|||||| |||||||||| |
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| T |
25111814 |
taaaaacttatttattta |
25111797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 25111775 - 25111688
Alignment:
| Q |
75 |
ataaacatcttcattctgacataaagatgcaaatctatgttttcataagatattggatctctattcgagttaaaaatatatttattta |
162 |
Q |
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| T |
25111775 |
ataaacatcttcgttctaacatgaagatgcaaatctctgtttttataagacattgaatctcaattcaagttaaaaacttatttattta |
25111688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 25061223 - 25061161
Alignment:
| Q |
197 |
aaatatatttatttataattttcttagcatgttgaaataaacatattcgttttgacatgaaga |
259 |
Q |
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| T |
25061223 |
aaatatatttatttatagttttcttaacccgttgaaacaaacatcttcgttttgacatgaaga |
25061161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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