View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11735_high_2 (Length: 429)
Name: NF11735_high_2
Description: NF11735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11735_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 25 - 414
Target Start/End: Original strand, 6243253 - 6243634
Alignment:
| Q |
25 |
atagaatacataaaagttgcaaaaagtctatgcttgcattcgcaatcaaagtgtttgaagccgatatgcaggacaacccggtagtgcagaaagnnnnnnn |
124 |
Q |
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| T |
6243253 |
atagaatacataaaagttgcaaaaagtctatgcttgcattcgcaatcaaagtgtttgaagtcgatatgcaggacaacccggtagtgcagaaagaaaaaaa |
6243352 |
T |
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| Q |
125 |
n-cttggttgagagtatgaaattattttgagtagaatagagagagtgtatttaaccatagtaattcttgagataagtcgcagctaat-----gagaagtg |
218 |
Q |
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| T |
6243353 |
aacttggttgagaggatgaaattattttgagtagaatagagagagtgaatttaaccatagtaattcttgagataagtcgcagctaatgtatagagaagtg |
6243452 |
T |
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| Q |
219 |
aagtaaatagaaaagtcaaggtcagtctaaggggctgcctctaaagcaagggttttaggcccttgagatttttaggcctcatattcgggtcgctttaaat |
318 |
Q |
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| T |
6243453 |
aagtaaatagaaaagtcaaggtcag--------------tacaaagcaagggctttaggcccttgagatttttaggcctcatattccggtcgttttaaat |
6243538 |
T |
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| Q |
319 |
ataattctgtaatttaaattattttnnnnnnnttgcttctaacttggttggtagttaaatcaaggactttagacttgtagttcatgttgtaagttt |
414 |
Q |
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| T |
6243539 |
ataattctgtaactaaaattattaaaaaaaaattgcttctaacttggttggtagttaaatcaagggctttagacttgtagtttatgttgtaagttt |
6243634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 303
Target Start/End: Complemental strand, 3071822 - 3071765
Alignment:
| Q |
245 |
ctaaggggctgcctctaaagcaagggttttaggcccttgagatttttaggcctcatatt |
303 |
Q |
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| T |
3071822 |
ctaaggggctgccactaaagcaagggttttaggccc-cgagtattttaggcctcatatt |
3071765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 279
Target Start/End: Original strand, 49408615 - 49408649
Alignment:
| Q |
245 |
ctaaggggctgcctctaaagcaagggttttaggcc |
279 |
Q |
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| T |
49408615 |
ctaaggggctgccactaaagcaagggttttaggcc |
49408649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 29067973 - 29067941
Alignment:
| Q |
247 |
aaggggctgcctctaaagcaagggttttaggcc |
279 |
Q |
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| T |
29067973 |
aaggggctgccactaaagcaagggttttaggcc |
29067941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 4033344 - 4033308
Alignment:
| Q |
244 |
tctaaggggctgcctctaaagcaagggttttaggccc |
280 |
Q |
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| T |
4033344 |
tctaaggggctgccactaaagcaaaggttttaggccc |
4033308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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