View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11735_low_1 (Length: 668)

Name: NF11735_low_1
Description: NF11735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11735_low_1
NF11735_low_1
[»] chr7 (2 HSPs)
chr7 (261-568)||(11098508-11098820)
chr7 (357-438)||(781351-781432)
[»] chr6 (2 HSPs)
chr6 (261-568)||(17998509-17998821)
chr6 (307-381)||(6530741-6530815)
[»] chr8 (4 HSPs)
chr8 (261-568)||(36283501-36283814)
chr8 (216-262)||(36283928-36283974)
chr8 (134-176)||(36283973-36284015)
chr8 (359-404)||(31710416-31710461)
[»] chr4 (8 HSPs)
chr4 (19-137)||(24090932-24091050)
chr4 (19-137)||(24086870-24086988)
chr4 (347-437)||(10755777-10755867)
chr4 (347-437)||(10969546-10969636)
chr4 (347-436)||(723290-723379)
chr4 (358-401)||(12325892-12325935)
chr4 (489-530)||(1677434-1677475)
chr4 (489-530)||(1683962-1684003)
[»] chr5 (2 HSPs)
chr5 (580-637)||(15249219-15249276)
chr5 (356-404)||(11203645-11203693)
[»] scaffold0010 (1 HSPs)
scaffold0010 (357-438)||(128644-128725)
[»] chr3 (2 HSPs)
chr3 (347-438)||(806770-806861)
chr3 (359-404)||(17594919-17594964)
[»] chr1 (1 HSPs)
chr1 (522-568)||(19913166-19913217)
[»] scaffold0130 (1 HSPs)
scaffold0130 (359-409)||(17288-17338)


Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 261 - 568
Target Start/End: Original strand, 11098508 - 11098820
Alignment:
Q  261 agagaattgctagaagatgatatatagtctcagattttattttgaaatatacacacttgggatctacttgagagctatgaaaaattcaaccaacaagagg 360  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  11098508 agagaattgccagaagatgatatatagtctcagattttattttgaaatatacatactttggatctacttgagagctatgaaaaattcaaccaacaagagg 11098607  T
Q  361 agctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatggttttacttttc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11098608 agctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatggttttacttttc 11098707  T
Q  461 atatctttcctattttgctatactttaaatttttgtgcttaatatattttgagacaatatatttccacttgttgggtaagtaatgct-----agaattaa 555  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||||||    
T  11098708 atatctttcttattttgctatactttaaatttttgtgcttaatatattttgagacaatatatttccacttgttgggtaaataatgctaggaaagaattaa 11098807  T
Q  556 gaaattgtatatt 568  Q
    |||||||||||||    
T  11098808 gaaattgtatatt 11098820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 781432 - 781351
Alignment:
Q  357 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 438  Q
    ||||||||||| ||||||||||||||||| | | |||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  781432 gaggagctcaattcatcaccatcatagtcttccatatgaacaagcagagatgaatacattatggtttctcttgatgccaaca 781351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 261 - 568
Target Start/End: Complemental strand, 17998821 - 17998509
Alignment:
Q  261 agagaattgctagaagatgatatatagtctcagattttattttgaaatatacacacttgggatctacttgagagctatgaaaaattcaaccaacaagagg 360  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  17998821 agagaattgccagaagatgatatatagtctcagattttattttgaaatatacatactttggatctacttgagagctatgaaaaattcaaccaacaagagg 17998722  T
Q  361 agctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatggttttacttttc 460  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17998721 agctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatggttttacttttc 17998622  T
Q  461 atatctttcctattttgctatactttaaatttttgtgcttaatatattttgagacaatatatttccacttgttgggtaagtaatgct-----agaattaa 555  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     ||||||||    
T  17998621 atatctttcttattttgctatactttaaatttttgtgcttaatatattttgagacaatatatttccacttgttgggtaaataatgctaggaaagaattaa 17998522  T
Q  556 gaaattgtatatt 568  Q
    |||||||||||||    
T  17998521 gaaattgtatatt 17998509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 307 - 381
Target Start/End: Complemental strand, 6530815 - 6530741
Alignment:
Q  307 atatacacacttgggatctacttgagagctatgaaaaattcaaccaacaagaggagctcaaatcatcaccatcat 381  Q
    |||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||| |||||||||||||    
T  6530815 atatacacactttggatctacttgagagctatggaagatccaaccaacaagaggagctcaattcatcaccatcat 6530741  T

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Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 261 - 568
Target Start/End: Complemental strand, 36283814 - 36283501
Alignment:
Q  261 agagaattgctagaagatgatatatagtctcagattttattttgaaatatacacacttgggatctacttgagagctatgaaaaa-ttcaaccaacaagag 359  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  36283814 agagaattgccagaagatgatatatagtctcagattttattttgaaatatacacactttggatctacttgagagctatgaaaaaattcaaccaacaagag 36283715  T
Q  360 gagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacatggaagaatggttttactttt 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36283714 gagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaacttggaagaatggttttactttt 36283615  T
Q  460 catatctttcctattttgctatactttaaatttttgtgcttaatatattttgagacaatatatttccacttgttgggtaagtaatgct-----agaatta 554  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||     |||||||    
T  36283614 catatccttcttattttgctatactttaaatttttgtgcttaatatattgtgagacaatatatttccacttgttggataagtaatgctaggaaagaatta 36283515  T
Q  555 agaaattgtatatt 568  Q
    ||||||||||||||    
T  36283514 agaaattgtatatt 36283501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 36283974 - 36283928
Alignment:
Q  216 aatttgattgaatattattatcacaatcagcctgcacaataattcag 262  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  36283974 aatttgaataaatattattatcacaatcagcctgcacaataattcag 36283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 36284015 - 36283973
Alignment:
Q  134 atagatccatatctagttggaaattgcttactaaaagtactaa 176  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  36284015 atagatccatatctagttggaaattgcttactaaaagtgctaa 36283973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 31710416 - 31710461
Alignment:
Q  359 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 404  Q
    ||||||||| || |||||||||||||||| ||||||||||||||||    
T  31710416 ggagctcaattcgtcaccatcatagtcatccttatgaacaggcgga 31710461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 24091050 - 24090932
Alignment:
Q  19 acttggccatgctgaattacgagttcacgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24091050 acttggccatgctgaattacgagttcacgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgac 24090951  T
Q  119 cgaaattttaatgagatag 137  Q
    |||||||||||||||||||    
T  24090950 cgaaattttaatgagatag 24090932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 24086988 - 24086870
Alignment:
Q  19 acttggccatgctgaattacgagttcacgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgac 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24086988 acttggccatgctgaattacgagttcgcgtgccaccatctattgcatttgcaacaggaggaagattgcagggacttagactccagcttgcacttcttgac 24086889  T
Q  119 cgaaattttaatgagatag 137  Q
    ||| |||||||||||||||    
T  24086888 cgagattttaatgagatag 24086870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 437
Target Start/End: Original strand, 10755777 - 10755867
Alignment:
Q  347 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 437  Q
    ||||||||||||||| ||||| |||| | ||| |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10755777 caaccaacaagaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10755867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 347 - 437
Target Start/End: Original strand, 10969546 - 10969636
Alignment:
Q  347 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaac 437  Q
    ||||||||||||||| ||||| |||| | ||| |||||||| || |||| ||||||||||| |||||||| ||| ||| ||||||||||||    
T  10969546 caaccaacaagaggacctcaattcataaacattatagtcatcctcatgagcaggcggagatgaattcattgtggtttctctcgatgccaac 10969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 347 - 436
Target Start/End: Original strand, 723290 - 723379
Alignment:
Q  347 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaa 436  Q
    |||| |||||||||| ||||| |||| | ||| ||||||||||| |||| ||||||||||| |||||||||||| | | |||||||||||    
T  723290 caacaaacaagaggacctcaattcataaacattatagtcattctcatgagcaggcggagatgaattcattatggttcctctcgatgccaa 723379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 401
Target Start/End: Original strand, 12325892 - 12325935
Alignment:
Q  358 aggagctcaaatcatcaccatcatagtcattcttatgaacaggc 401  Q
    ||||||||||||| |||||||||||||| | |||||||||||||    
T  12325892 aggagctcaaatcgtcaccatcatagtcctccttatgaacaggc 12325935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 1677434 - 1677475
Alignment:
Q  489 atttttgtgcttaatatattttgagacaatatatttccactt 530  Q
    |||| |||||| |||||| |||||||||||||||||||||||    
T  1677434 atttgtgtgctcaatatagtttgagacaatatatttccactt 1677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 530
Target Start/End: Original strand, 1683962 - 1684003
Alignment:
Q  489 atttttgtgcttaatatattttgagacaatatatttccactt 530  Q
    |||| |||||| |||||| |||||||||||||||||||||||    
T  1683962 atttgtgtgctcaatatagtttgagacaatatatttccactt 1684003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 580 - 637
Target Start/End: Complemental strand, 15249276 - 15249219
Alignment:
Q  580 tatgtgcctcacctgcttataaatgtgaaacatattaaactctcgctgctgtgtgcca 637  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15249276 tatgtgcctcacctgcttataaatgtgaaacatattgaactcttgctgctgtgtgcca 15249219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 11203645 - 11203693
Alignment:
Q  356 agaggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 404  Q
    |||||||||||| || |||||||||||||| | ||||| ||||||||||    
T  11203645 agaggagctcaattcgtcaccatcatagtcttccttataaacaggcgga 11203693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 357 - 438
Target Start/End: Complemental strand, 128725 - 128644
Alignment:
Q  357 gaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 438  Q
    ||||||||||| ||||||||||||||||||| |||||||||| || ||||| ||| |||||||| ||| || ||||||||||    
T  128725 gaggagctcaattcatcaccatcatagtcatccttatgaacatgcagagatgaatacattatggtttctcttgatgccaaca 128644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 438
Target Start/End: Original strand, 806770 - 806861
Alignment:
Q  347 caaccaacaagaggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataaattcattatggattccctcgatgccaaca 438  Q
    ||||||||||||||| | ||| |||| ||||| |||||||| |  || | |||| |||||| |||||||||||| ||| |||||||| ||||    
T  806770 caaccaacaagaggaccacaattcataaccattatagtcatccacataagcaggaggagatgaattcattatggtttctctcgatgctaaca 806861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 404
Target Start/End: Original strand, 17594919 - 17594964
Alignment:
Q  359 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcgga 404  Q
    ||||||||| || |||||||||||||||| ||| ||||||||||||    
T  17594919 ggagctcaattcgtcaccatcatagtcatccttgtgaacaggcgga 17594964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 568
Target Start/End: Complemental strand, 19913217 - 19913166
Alignment:
Q  522 tttccacttgttgggtaagtaatgct-----agaattaagaaattgtatatt 568  Q
    ||||||||||||||||||||||||||     |||||||||||||||||||||    
T  19913217 tttccacttgttgggtaagtaatgctaggcaagaattaagaaattgtatatt 19913166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 409
Target Start/End: Complemental strand, 17338 - 17288
Alignment:
Q  359 ggagctcaaatcatcaccatcatagtcattcttatgaacaggcggagataa 409  Q
    |||| |||| || |||||||||||||||| |||||||||||||||| ||||    
T  17338 ggagttcaattcgtcaccatcatagtcatccttatgaacaggcggatataa 17288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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