View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11735_low_4 (Length: 252)

Name: NF11735_low_4
Description: NF11735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11735_low_4
NF11735_low_4
[»] chr3 (3 HSPs)
chr3 (1-138)||(14745182-14745319)
chr3 (29-119)||(37416448-37416538)
chr3 (24-95)||(37415035-37415106)
[»] chr7 (9 HSPs)
chr7 (1-133)||(35295701-35295833)
chr7 (181-236)||(35295651-35295706)
chr7 (32-119)||(43442776-43442863)
chr7 (1-69)||(2414811-2414879)
chr7 (32-100)||(10955880-10955948)
chr7 (32-119)||(666742-666829)
chr7 (54-119)||(10957189-10957254)
chr7 (4-101)||(44372763-44372860)
chr7 (4-101)||(44381619-44381716)
[»] chr5 (11 HSPs)
chr5 (1-100)||(10735798-10735897)
chr5 (24-119)||(11797538-11797633)
chr5 (32-119)||(10736951-10737038)
chr5 (22-100)||(35047454-35047532)
chr5 (1-119)||(41144501-41144618)
chr5 (31-100)||(13519507-13519576)
chr5 (1-100)||(4127235-4127334)
chr5 (56-119)||(35081474-35081537)
chr5 (54-120)||(28702584-28702650)
chr5 (35-100)||(4124792-4124857)
chr5 (1-100)||(1102653-1102752)
[»] chr8 (10 HSPs)
chr8 (25-99)||(38697904-38697978)
chr8 (24-138)||(42793696-42793810)
chr8 (1-118)||(43202113-43202230)
chr8 (32-100)||(31844403-31844471)
chr8 (1-100)||(31845776-31845875)
chr8 (3-100)||(9854864-9854960)
chr8 (32-95)||(43203293-43203356)
chr8 (50-119)||(28291396-28291465)
chr8 (5-101)||(10669431-10669527)
chr8 (4-100)||(20180659-20180755)
[»] chr2 (4 HSPs)
chr2 (6-100)||(19398787-19398881)
chr2 (24-138)||(19397527-19397641)
chr2 (29-100)||(1310678-1310749)
chr2 (54-119)||(1149223-1149288)
[»] scaffold0219 (1 HSPs)
scaffold0219 (32-119)||(8203-8290)
[»] chr4 (11 HSPs)
chr4 (32-117)||(36846572-36846657)
chr4 (1-100)||(26629826-26629925)
chr4 (32-95)||(26631232-26631295)
chr4 (1-119)||(1519827-1519945)
chr4 (42-119)||(26491433-26491510)
chr4 (43-100)||(35348832-35348889)
chr4 (32-100)||(39056460-39056528)
chr4 (42-119)||(26425788-26425865)
chr4 (54-119)||(35350143-35350208)
chr4 (32-100)||(1521207-1521275)
chr4 (31-119)||(8363401-8363489)
[»] chr1 (11 HSPs)
chr1 (5-119)||(12665807-12665921)
chr1 (24-134)||(40533609-40533719)
chr1 (32-100)||(48528910-48528978)
chr1 (29-100)||(7306265-7306336)
chr1 (1-119)||(26286428-26286546)
chr1 (43-100)||(7304847-7304904)
chr1 (54-119)||(48527550-48527615)
chr1 (32-119)||(12667288-12667375)
chr1 (24-118)||(5613090-5613184)
chr1 (24-100)||(28050356-28050432)
chr1 (32-100)||(26287797-26287865)
[»] chr6 (1 HSPs)
chr6 (32-119)||(11968490-11968577)


Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14745182 - 14745319
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  14745182 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggaccaagatgtaaac 14745281  T
Q  101 taaatattatttaggggacactttatgcaattaagcct 138  Q
    | ||||||||||||||||||||||||||||||||||||    
T  14745282 tgaatattatttaggggacactttatgcaattaagcct 14745319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 37416448 - 37416538
Alignment:
Q  29 tttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||| ||||||||| | ||||||| |||| | | |||| |||||||||    
T  37416448 tttttgactaacggagcaaaacaagagggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattacttaggggac 37416538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 37415106 - 37415035
Alignment:
Q  24 ggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatg 95  Q
    |||| |||||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||| || |||||||    
T  37415106 ggacctttttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatg 37415035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 35295833 - 35295701
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  35295833 ttggggttaaagttaacggtcatgaacttttttgattaactgagcaaaacaagagggactaaaacgttgactttacgagttatgggaccaaaatgtaaac 35295734  T
Q  101 taaatattatttaggggacactttatgcaatta 133  Q
    | |||||||||||||||||||||||||||||||    
T  35295733 tgaatattatttaggggacactttatgcaatta 35295701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 35295706 - 35295651
Alignment:
Q  181 caattatattctctaagatgagtagctataaagattgaaaattagagattgattgt 236  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35295706 caattatattctctaagatgagtagctataaagattgaaaattggagattgattgt 35295651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 43442776 - 43442863
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||| ||| |||| | | |||| |||||||||    
T  43442776 ttgactaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattacttaggggac 43442863  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 2414879 - 2414811
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttg 69  Q
    |||||||||||||| ||||| | |||| |||||||||||| ||||||||| | ||||||||||||||||    
T  2414879 ttggggttaaagttaacggttaaggacctttttgactaacggagcaaaaccaaagggaccaaaacgttg 2414811  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 10955948 - 10955880
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||  |||||||| ||||||||| ||||    
T  10955948 ttgactaacggagcaaaacaagagggactaaaacgttgattttataagttatggaatcaaaatgaaaac 10955880  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 666829 - 666742
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||| ||||||||||||||||||| |||  || | |||| |||||||| |||||||||| ||||| |  ||||||||||||||    
T  666829 ttgactaacggagcaaaacaagagggaccgaaatattaattttatgagttatgagatcaaaatgaaaactgataattatttaggggac 666742  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 10957189 - 10957254
Alignment:
Q  54 agggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||||||||| | |||||||||||||||| ||||||| |||| | | |||| |||||||||    
T  10957189 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggac 10957254  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 44372860 - 44372763
Alignment:
Q  4 gggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaact 101  Q
    ||||||||||| |  ||||||||| ||||||| |||| ||||||||   |||||||||||| | | | |||| |||||||| || ||||||| |||||    
T  44372860 gggttaaagttaatagtcatggacctttttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaact 44372763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 44381716 - 44381619
Alignment:
Q  4 gggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaact 101  Q
    ||||||||||| |  ||||||||| ||||||| |||| ||||||||   |||||||||||| | | | |||| |||||||| || ||||||| |||||    
T  44381716 gggttaaagttaatagtcatggacctttttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaact 44381619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 10735897 - 10735798
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||| ||||||||| ||||| | |||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||    
T  10735897 ttggagttaaagttaacggttagggacctttttgactaacggagcaaaacaagagggaccaaaacgttgattttacgagttatgggaccaaaatgaaaac 10735798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 11797538 - 11797633
Alignment:
Q  24 ggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||| |||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||| |  ||||||||||||||    
T  11797538 ggacctttttgactaacggagaaaaacaagagggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataattatttaggggac 11797633  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 10736951 - 10737038
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||| |||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||| | | |||| |||||||||    
T  10736951 ttgattaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattacttaggggac 10737038  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 100
Target Start/End: Complemental strand, 35047532 - 35047454
Alignment:
Q  22 atggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||| |||||||||||| ||||||||||| ||||||   |||||||| |||||||||||||||| ||||||| ||||    
T  35047532 atggacctttttgactaacggagcaaaacaaaagggacttgaacgttgattttacgagttatgggaccaaaatgaaaac 35047454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 41144501 - 41144618
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| || |||| |||| |||||||||||| ||||||||  | ||||||||||||||||| ||||  | |||||||| ||||||| ||||    
T  41144501 ttggggttaaagttaaccgtca-ggacctttttgactaacggagcaaaatcaaagggaccaaaacgttgattttagaatttatgggaccaaaatgaaaac 41144599  T
Q  101 taaatattatttaggggac 119  Q
     | | |||| |||||||||    
T  41144600 aacaaattaattaggggac 41144618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 13519576 - 13519507
Alignment:
Q  31 tttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||| ||| ||||||||||||| ||||||||| ||||| ||| ||||||||||||  |||||||||||    
T  13519576 tttgacaaacggagcaaaacaagaaggaccaaaatgttgatttttcgagttatgggactaaaatgtaaac 13519507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 4127235 - 4127334
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| ||||  |  |||||||| ||||||| |||||||    || ||||||||||||| | |||||||||||||||| ||||||| ||||    
T  4127235 ttggggttaaagttaacggcaagagactttttagactaacggagcaaacgttgaaggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 4127334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 35081474 - 35081537
Alignment:
Q  56 ggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||||||||| |||||||||||||||| ||||||| |||| ||  |||| |||||||||    
T  35081474 ggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattacttaggggac 35081537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 28702650 - 28702584
Alignment:
Q  54 agggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggaca 120  Q
    ||||||||||||||| | |||||||||||||||| ||||||| |||| | | |||| ||||||||||    
T  28702650 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacttaggggaca 28702584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 4124857 - 4124792
Alignment:
Q  35 actaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||| ||||||||||| ||||||||||||||||| |||| || |||||| | ||||||| ||||    
T  4124857 actaacggagcaaaacaaaagggaccaaaacgttgattttatgaattatggaaccaaaatgaaaac 4124792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 1102752 - 1102653
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| || |||| |||| |||||||  ||| ||| |||    |||||||| ||| ||||| |||||||||||||||| ||| ||||||||    
T  1102752 ttggggttaaagttaacagtcagggacctttttgatgaacggagaaaacgttgagggacctaaatgttgattttacgagttatgggaccaatatgtaaac 1102653  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 38697978 - 38697904
Alignment:
Q  25 gacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaa 99  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| | |||||||||||    
T  38697978 gacttttttgactaacggagcaaaacaagagggaccaaaatgttgattttacaagttatggaaccaaaatgtaaa 38697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 42793810 - 42793696
Alignment:
Q  24 ggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggacactt 123  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||| | ||||| | |||||||| |||||| ||||||    |||||||||||| |  ||    
T  42793810 ggacctttttgactaacggagcaaaacaagagggaccaaaatgttaattttacaatttatgggaccaaaatataaactggtaattatttagggggccatt 42793711  T
Q  124 tatgcaattaagcct 138  Q
     ||||||||||||||    
T  42793710 aatgcaattaagcct 42793696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43202230 - 43202113
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||||| || ||||||| |||| |||||||||||| | |||||    |||||||||||| ||||| ||||||||||||||||  |||||| ||||    
T  43202230 ttggggttaaaattaacggtcagggacctttttgactaacggtgcaaacgttgagggaccaaaatgttgattttacgagttatgggactaaaatgaaaac 43202131  T
Q  101 taaatattatttagggga 118  Q
     | | |||| ||||||||    
T  43202130 aacaaattacttagggga 43202113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 31844471 - 31844403
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| ||||||||||||||||||||||| ||| | ||||||||||| ||||  |||||| ||||    
T  31844471 ttgactaacggagcaaaacaagagggaccaaaatgttaattttacgagttacgggactaaaatgaaaac 31844403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31845776 - 31845875
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| || || | |||| ||||||| |||| |||||||    |||||||||||| ||||| |||| ||||||||||| ||||||| ||||    
T  31845776 ttggggttaaagttaaccgttagggacctttttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaac 31845875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 9854864 - 9854960
Alignment:
Q  3 ggggttaaagttgacggtcatggacttttttgactaactgagcaaaa-caagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||| ||||||| |||| ||||||||| || |||||||| ||||||| ||||||| || || ||||| | |||||||| ||||||||||||    
T  9854864 ggggttaaagttaacggtca-ggacctttttgactgacggagcaaaatcaagagg-accaaaatgtggattttacaatttatgggaccaaaatgtaaac 9854960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 43203293 - 43203356
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatg 95  Q
    |||||| || |||||||| |||||||||  ||| ||||| |||||||||||||||| |||||||    
T  43203293 ttgactgacggagcaaaataagagggacggaaatgttgattttacgagttatgggaccaaaatg 43203356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 28291396 - 28291465
Alignment:
Q  50 caagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||||| ||| ||| | |||||||||||||||| |||| || ||||| |  ||||||||||||||    
T  28291396 caagagggaccgaaatgttaattttacgagttatgggaccaaagtgaaaactgataattatttaggggac 28291465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 10669431 - 10669527
Alignment:
Q  5 ggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaact 101  Q
    |||||||||| || | || |||||||||||| |||| |||||||    |||| ||||||| ||||| |||| || |||||||| ||||||| |||||    
T  10669431 ggttaaagttaacagccaaggacttttttgaataacggagcaaacgttgaggtaccaaaatgttgattttaagatttatgggaccaaaatgaaaact 10669527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 20180659 - 20180755
Alignment:
Q  4 gggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||||| |  ||||||||| ||||||| |||| ||||||||   |||||||||||| | | | |||| |||||||| || ||||||| ||||    
T  20180659 gggttaaagttaatagtcatggacctttttgaataacggagcaaaagtcgagggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 20180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 19398787 - 19398881
Alignment:
Q  6 gttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| ||||||| |||||||| |||||||| ||||||||||||||||||||||| || |  ||||| | |||||||| ||||||||||||    
T  19398787 gttaaagttaacggtcagggacttttctgactaacggagcaaaacaagagggaccaaaatgtaggttttacaatttatgggaccaaaatgtaaac 19398881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 19397641 - 19397527
Alignment:
Q  24 ggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggacactt 123  Q
    |||| ||| |||||||| ||||||||| ||||||||||||| |||   ||||  | |||||||| |||||||||||||    ||||||||||||||  ||    
T  19397641 ggacctttatgactaacggagcaaaacgagagggaccaaaatgttagttttaaaatttatgggaccaaaatgtaaactggtaattatttaggggaccatt 19397542  T
Q  124 tatgcaattaagcct 138  Q
     ||||||||||||||    
T  19397541 gatgcaattaagcct 19397527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 1310678 - 1310749
Alignment:
Q  29 tttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||||||  | |||||| ||||||||||||| ||||| ||||||||||||| ||| |||||| ||||    
T  1310678 tttttgactaacgaaacaaaacgagagggaccaaaatgttgattttacgagttatgagattaaaatgaaaac 1310749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 1149223 - 1149288
Alignment:
Q  54 agggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||||||||||| ||||  |||||||||| ||||||| |||| | | |||| |||||||||    
T  1149223 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaattagttaggggac 1149288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 8203 - 8290
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||| ||| ||||| ||||||||||||| ||||| |||||||||||||||| |||||||||||| ||  |||| |||||||||    
T  8203 ttgactaacggagtaaaacgagagggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattacttaggggac 8290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 36846572 - 36846657
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttagggg 117  Q
    ||||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| |||| | | |||| |||||||    
T  36846572 ttgacgaacggagcaaaacaagagggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattacttagggg 36846657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 26629925 - 26629826
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| || ||||||||| ||||||| |||| |||||||    |||||||||||| ||||| |||| ||||||||||| ||||||| ||||    
T  26629925 ttggggttaaagttaaccgtcatggacctttttgattaacggagcaaacgttgagggaccaaaatgttgattttatgagttatgggaccaaaatgaaaac 26629826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 26631232 - 26631295
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatg 95  Q
    ||||||||| ||||||||||||||| ||||||| ||||| ||||||||||||| || |||||||    
T  26631232 ttgactaacggagcaaaacaagaggaaccaaaatgttgattttacgagttatgagaccaaaatg 26631295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 1519945 - 1519827
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| || |||| | || |||||||||||| |||||||    |||||||||| | ||||| ||||||| |||||||| ||||||| ||||    
T  1519945 ttggggttaaagttaacagtcaggtacctttttgactaacagagcaaatgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaac 1519846  T
Q  101 taaatattatttaggggac 119  Q
     | | |||| |||||||||    
T  1519845 gacaaattagttaggggac 1519827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 26491510 - 26491433
Alignment:
Q  42 gagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||||||| |||||||||||||| ||||| ||||||||||||| || |||||| |||||| || |||| |||| ||||    
T  26491510 gagcaaaataagagggaccaaaatgttgattttacgagttatgagaccaaaatataaactgaaaattacttagaggac 26491433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 35348889 - 35348832
Alignment:
Q  43 agcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||||||||||| |||||||||| ||||| |||||||||| ||||||| ||||    
T  35348889 agcaaaacaagagggactaaaacgttgattttacaagttatgggaccaaaatgaaaac 35348832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 39056528 - 39056460
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||| | ||||| || ||||||| ||||    
T  39056528 ttgactaacggagcaaaacaagagggactaaaacgttgattttacaaattatgagaccaaaatgaaaac 39056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 26425788 - 26425865
Alignment:
Q  42 gagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||||||||||||| ||||||||  |||| |||||||||||| | | ||||||| ||||| || |||| |||||||||    
T  26425788 gagcaaaacaagagagaccaaaatattgattttacgagttattgtaccaaaatgaaaactgaaaattacttaggggac 26425865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 35350143 - 35350208
Alignment:
Q  54 agggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||||||||| | ||||||||||||| |||||||||| |||| | | |||| |||||||||    
T  35350143 agggaccaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattacttaggggac 35350208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 1521207 - 1521275
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| ||| ||||   |||||||||||| ||||| ||||||| |||||||||||||||| ||||    
T  1521207 ttgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggatcaaaatgaaaac 1521275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 8363401 - 8363489
Alignment:
Q  31 tttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||||||||| ||||||||| | ||||||||||| ||    ||||| | |||| ||| ||||||||||||| |  ||||||||||||||    
T  8363401 tttgactaacggagcaaaaccaaagggaccaaaatgtgagttttacaatttataggaccaaaatgtaaactcataattatttaggggac 8363489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 12665921 - 12665807
Alignment:
Q  5 ggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaa 104  Q
    |||||||||| ||||| | |||| ||||||||||||  ||||||| |||||||||| ||| ||||| ||||||| |||||||| ||||||  ||||| |     
T  12665921 ggttaaagttaacggttagggacctttttgactaacgaagcaaaataagagggaccgaaatgttgattttacgaattatgggaccaaaataaaaactgat 12665822  T
Q  105 tattatttaggggac 119  Q
     |||| |||||||||    
T  12665821 aattacttaggggac 12665807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 134
Target Start/End: Original strand, 40533609 - 40533719
Alignment:
Q  24 ggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggacactt 123  Q
    |||| |||||||||||| ||||||| | ||||||||||||| ||||  ||||| | |||||| | ||||||||||||| |  ||||||||||||||  ||    
T  40533609 ggacctttttgactaacggagcaaagcgagagggaccaaaatgttggttttacaatttatggaaccaaaatgtaaactgataattatttaggggaccatt 40533708  T
Q  124 tatgcaattaa 134  Q
     ||||||||||    
T  40533709 gatgcaattaa 40533719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 48528910 - 48528978
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| ||| |||| ||||||||| |||| ||||| |||||||||||||||| ||||||||||||    
T  48528910 ttgactaacggagaaaaataagagggactaaaatgttgattttacgagttatgggaccaaaatgtaaac 48528978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 7306265 - 7306336
Alignment:
Q  29 tttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||| ||| ||||||||||||||||||| ||| | |||||||||||| ||| ||||||| ||||    
T  7306265 tttttgactaacagaggaaaacaagagggaccaaaatgttaattttacgagttataggaccaaaatgaaaac 7306336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 26286546 - 26286428
Alignment:
Q  1 ttggggttaaagttgacggtcatggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||||||||||||| || | || |||| |||||||||||| |||||||    |||||||||| | ||||| ||||||| |||||||| ||||||| ||||    
T  26286546 ttggggttaaagttaacagccagggacctttttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaac 26286447  T
Q  101 taaatattatttaggggac 119  Q
     | | |||| |||||||||    
T  26286446 gacaaattagttaggggac 26286428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 7304904 - 7304847
Alignment:
Q  43 agcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||| ||||||||||||||  |||| ||||||||||||||||||| |||| ||||    
T  7304904 agcaaaataagagggaccaaaatattgattttacgagttatgggatcacaatgaaaac 7304847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 48527615 - 48527550
Alignment:
Q  54 agggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||||| ||| | |||||||||||||||| |||||||||||| | | |||| |||||||||    
T  48527615 agggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattacttaggggac 48527550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 12667288 - 12667375
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    ||||||||| ||||||||||||||||||| ||| ||| | ||||||| || | ||| ||||||| ||||| |  ||||||||| ||||    
T  12667288 ttgactaacggagcaaaacaagagggaccgaaatgttaattttacgaattctaggaccaaaatgaaaactgataattatttagaggac 12667375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 5613090 - 5613184
Alignment:
Q  24 ggacttttttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttagggga 118  Q
    |||| |||||||||||| |||||||    |||||||||| | ||||| ||||||| |||||||| ||||||| |||| | | |||| ||||||||    
T  5613090 ggacctttttgactaacggagcaaacgttgagggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaattagttagggga 5613184  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 28050432 - 28050356
Alignment:
Q  24 ggacttttttgactaactgagcaaaa-caagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    |||| |||||||||||| |||||||| |||| |||||||||| || || ||||| | |||||||| ||||||||||||    
T  28050432 ggacctttttgactaacggagcaaaatcaag-gggaccaaaatgtggattttacaatttatgggaccaaaatgtaaac 28050356  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 26287797 - 26287865
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaac 100  Q
    ||||||||| ||| ||||   |||||||||||| ||||| ||||||| |||||||| ||||||| ||||    
T  26287797 ttgactaacggagtaaaagttgagggaccaaaatgttgattttacgaattatgggaccaaaatgaaaac 26287865  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 11968490 - 11968577
Alignment:
Q  32 ttgactaactgagcaaaacaagagggaccaaaacgttgactttacgagttatgggatcaaaatgtaaactaaatattatttaggggac 119  Q
    |||||||||  |||||||||| ||||||||||||||| | |||||  |||||| || ||||||| |||| | | |||| |||||||||    
T  11968490 ttgactaacaaagcaaaacaaaagggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaattagttaggggac 11968577  T

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