View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11736_high_5 (Length: 321)
Name: NF11736_high_5
Description: NF11736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11736_high_5 |
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| [»] chr2 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 35280325 - 35280015
Alignment:
| Q |
11 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaacaaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35280325 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
35280226 |
T |
|
| Q |
111 |
tctggtggtgacacaaatttggcacctcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttc |
210 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || ||||||||||||||||||||| |
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| T |
35280225 |
tctggcggtgacacaaatttggctcctcttgattctgtctctcctgttacttttgacaacaattattatagggatctagttgctaataaaggacttctta |
35280126 |
T |
|
| Q |
211 |
attctgatcaagcacttttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35280125 |
attctgatcaagcacttttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgc |
35280026 |
T |
|
| Q |
311 |
tatggtgaaga |
321 |
Q |
| |
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||||||||||| |
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| T |
35280025 |
tatggtgaaga |
35280015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 321
Target Start/End: Complemental strand, 35289670 - 35289360
Alignment:
| Q |
11 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaacaaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
110 |
Q |
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|||||| ||||||||||||||||||||| ||| ||| |||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| |||||| | |
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| T |
35289670 |
cataggtcaagcagaatgtcaatttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcctact |
35289571 |
T |
|
| Q |
111 |
tctggtggtgacacaaatttggcacctcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttc |
210 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
35289570 |
tctggtggtgacataaatttggcacctcttgattctgtctctccagttacttttgacaacaattactataatgaccttgttgctaataaaggacttcttc |
35289471 |
T |
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| Q |
211 |
attctgatcaagcacttttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgc |
310 |
Q |
| |
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||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||| | ||||||||| |||||||||||| ||| |
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| T |
35289470 |
attctgatcaagctcttttcaatggtgttggttctcaagtttctttggttaggacttatagtagaaataatattgcttttaaaagagactttgcagctgc |
35289371 |
T |
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| Q |
311 |
tatggtgaaga |
321 |
Q |
| |
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||||||||||| |
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| T |
35289370 |
tatggtgaaga |
35289360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 321
Target Start/End: Complemental strand, 35275542 - 35275248
Alignment:
| Q |
27 |
tgtcaatttttccgaaatcgcatatacaatgaaacaaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctttctggtggtgacacaa |
126 |
Q |
| |
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|||||||||||| ||||||||||| |||||||| | ||||| |||| |||||| || |||||||||||| ||| || ||| |||||||||||||| | |
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| T |
35275542 |
tgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacacca |
35275443 |
T |
|
| Q |
127 |
atttggcacctcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttcattctgatcaagcact |
226 |
Q |
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|||| ||||| ||||||||||| ||||| || |||||||| ||||| |||| ||||||| ||||||||||||| ||||| ||||||||||||| || |
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| T |
35275442 |
atttagcaccctttgattctgtcactccaactaaatttgacaacaattattataaggaccttattgctaataaaggtcttctacattctgatcaagttct |
35275343 |
T |
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| Q |
227 |
tttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgctatggtgaaga |
321 |
Q |
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||||||||||| |||||||| | |||||||||||||| ||||||| | ||||| ||||||| |||||||||||| |||||||||||||| |
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| T |
35275342 |
tttcaatggtggtggttctcaaatttctttggttaggaagtatagtagagatggtgctgctttttctagagactttgctgctgctatggtgaaga |
35275248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 35322469 - 35322164
Alignment:
| Q |
11 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaacaaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
110 |
Q |
| |
|
||||||||||| ||| || ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
35322469 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctt |
35322370 |
T |
|
| Q |
111 |
tctggtggtgacacaaatttggcacctcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttc |
210 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| || || ||||| | ||||||||| |||||||||| | |||||||| | ||||| ||| | | |
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| T |
35322369 |
tctggtggtgacaccaatttagcacctcttgacactctcactccaacaaattttgacaacaattactataaaaatcttgttgcaagcaaaggtcttttcc |
35322270 |
T |
|
| Q |
211 |
attctgatcaagcacttttcaatggtgttggttctccagtttctttggttagggcttatagtataaatggttttgcttttagaagagactttgcttttgc |
310 |
Q |
| |
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||||||||||||| |||||||| | ||| |||| || | |||||||||| |||||||| |||||| | |||||||||||||||||||| |||| |
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| T |
35322269 |
attctgatcaagctcttttcaa---taatgggtctcaagataatttggttaggagttatagtaccaatggtgctacttttagaagagactttgctgttgc |
35322173 |
T |
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| Q |
311 |
tatggtgaa |
319 |
Q |
| |
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||||||||| |
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| T |
35322172 |
tatggtgaa |
35322164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 35307468 - 35307246
Alignment:
| Q |
11 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaacaaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
110 |
Q |
| |
|
||||||||||| ||| || ||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||| ||||||||| |
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| T |
35307468 |
cataggccaaggagagtgccaatttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctt |
35307369 |
T |
|
| Q |
111 |
tctggtggtgacacaaatttggcacctcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttcttc |
210 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| || || ||||| | |||||| || |||||||||| |||||||||| | ||||| ||| | | |
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| T |
35307368 |
tctggtggtgacaccaatttagcaccacttgatactctcactccaacaagttttgataacaattactataaaaaccttgttgcaagcaaaggtcttttcc |
35307269 |
T |
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| Q |
211 |
attctgatcaagcacttttcaat |
233 |
Q |
| |
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||||||||||||| ||||||||| |
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| T |
35307268 |
attctgatcaagctcttttcaat |
35307246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 35311814 - 35311589
Alignment:
| Q |
11 |
cataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaacaaacatcgacacaaactttgcaaccttaagaaaagcaaactgtcctctt |
110 |
Q |
| |
|
||||||||||| ||| |||| ||| ||| ||| |||||||||||||||||| ||||| ||||||||||| ||||||||||||||| | |||||| || || |
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| T |
35311814 |
cataggccaaggagagtgtcgattgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaatccaactgttctttt |
35311715 |
T |
|
| Q |
111 |
tctggtg---gtgacacaaatttggcacctcttgattctgtctctccagttacttttgacaataattactatagggaccttgttgctaataaaggacttc |
207 |
Q |
| |
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||| ||| |||||| ||||| ||||| |||||| || || ||||| | ||||||||| ||||| |||| |||||||||| | ||||| || |
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| T |
35311714 |
tctagtgacaatgacaccaatttagcaccacttgatactctcactccaacaagttttgacaacaattattataaaaaccttgttgcaagcaaaggtctat |
35311615 |
T |
|
| Q |
208 |
ttcattctgatcaagcacttttcaat |
233 |
Q |
| |
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| ||||||||||||| ||||||||| |
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| T |
35311614 |
tccattctgatcaagtccttttcaat |
35311589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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