View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11736_high_8 (Length: 310)

Name: NF11736_high_8

Description: NF11736

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11736_high_8

[»] chr4 (1 HSPs)

[»] chr2 (1 HSPs)

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 145; E-Value: 3e-76

Query Start/End: Original strand, 137 - 289

Target Start/End: Original strand, 28447982 - 28448134

Alignment:

Q	137	tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt	236	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28447982	tttgggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaatcttttgttggagtggttgt	28448081	T

Q	237	ctatttctataggcgtcaggcctacagacctcccctctacatcgatgatgatg	289	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28448082	ctatttctataggcatcagacctacagacctcccctctacatcgatgatgatg	28448134	T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 54; E-Value: 5e-22

Query Start/End: Original strand, 140 - 217

Target Start/End: Original strand, 18690607 - 18690684

Alignment:

Q	140	gggctttggctggccttggcttcggtgttcctctctctggggttcctattttgtgcgttggaagttacggccttcaat	217	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	18690607	gggctttggttggccttggcttcggtgttcctctctctgaggttcctagtttttgcgttggaagttacaaccttcaat	18690684	T

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